G1838878


Basic Information

Item Value
gene id G1838878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19072458 ~ 19072756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2105654
CTTAATACATAACAATGATACAATTTCAATTCAATGTGTTTAATGCAGGCCTGAATCACTTCAttgaatataaactcagcaaaaaaagaaaatgtctgtcagcaaacttaacatgtgtaaatatttgtatgaacatgacaagattcaacaactgagacataaactgaacaagttccacagacatgtgagtaacagaaattgaataatgtgtccctgaacaaagagagGGTCaatatcaaaagtaacagtcagtaagtatctggtgtggccaccagatgcattaagtactgcagtgcatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2105654 True 299 lncRNA 0.34 1 19072458 19072756

Neighbor

gene id symbol gene type direction distance location
LOC110502399 LOC106606289 coding upstream 32424 19008236 ~ 19040034 (+)
LOC110502398 LOC106576696 coding upstream 70248 18995593 ~ 19002210 (+)
LOC110503087 NA coding upstream 105931 18920198 ~ 18966527 (+)
LOC110502392 LOC105005759 coding upstream 252839 18805888 ~ 18819619 (+)
zgc:153169 LOC105005758 coding upstream 266892 18786735 ~ 18805566 (+)
LOC110502400 NA coding downstream 3721 19076477 ~ 19078412 (+)
LOC110502403 LOC106606339 coding downstream 78429 19151185 ~ 19168638 (+)
calhm3 calhm3 coding downstream 96044 19168800 ~ 19171227 (+)
LOC110502405 LOC106606354 coding downstream 121161 19193917 ~ 19226992 (+)
LOC110502412 LOC106606477 coding downstream 425578 19498334 ~ 19505841 (+)
G1838872 NA non-coding upstream 6014 19066224 ~ 19066444 (+)
G1838856 NA non-coding upstream 15471 19056749 ~ 19056987 (+)
G1838848 NA non-coding upstream 18379 19053688 ~ 19054079 (+)
G1838832 NA non-coding upstream 29876 19042349 ~ 19042582 (+)
G1838747 NA non-coding upstream 32158 19040153 ~ 19040300 (+)
G1838885 NA non-coding downstream 6239 19078995 ~ 19079355 (+)
G1838886 NA non-coding downstream 9105 19081861 ~ 19082762 (+)
G1838887 NA non-coding downstream 10856 19083612 ~ 19083875 (+)
G1838891 NA non-coding downstream 16093 19088849 ~ 19089849 (+)
G1838719 NA other upstream 123455 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 772182 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 1125083 17943337 ~ 17947408 (+)
G1836916 NA other upstream 1747098 17322174 ~ 17325360 (+)
G1836646 NA other upstream 1959631 17112370 ~ 17112827 (+)
G1839383 NA other downstream 449508 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 964367 20037044 ~ 20058237 (+)
G1839872 NA other downstream 991088 20062064 ~ 20064987 (+)
LOC110502429 ttc27 other downstream 1286041 20358591 ~ 20516930 (+)
G1840558 fbxo28 other downstream 1709109 20781865 ~ 20785203 (+)

Expression


Co-expression Network