G1838885


Basic Information

Item Value
gene id G1838885
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19078995 ~ 19079355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2105661
AGGCTCCACAATGTCCTCGTTGCTGAGGCAGACGTTGTGCAGCACAGAGTGCAACCACCTCAGGCACAAAGCTAGGCTTCACCTCCAGGGCCTTCATGAAGATGGAATGCCACATTCCTCACCTTGGAATGCTTTGCATCGTAGGTGGCCTCCACTGCACCCCTCACTGGTTGCCTGTAGGGTGTCAGACAGATGGGCTCCACCAGGCAGGGATACCCACCACCCCCGAAGAGACACCAACCTTGGGGTGGTTACAGGCTCTGAACATacacagggctgtgtttcatgacCCTGGTGTCATGCACAGGCCCGGGGAAGGCAATGTAGATGTCAATGAACCCGCACCTGTGGTCACAGATGG

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2105661 True 361 lncRNA 0.57 1 19078995 19079355

Neighbor

gene id symbol gene type direction distance location
LOC110502400 NA coding upstream 1060 19076477 ~ 19078412 (+)
LOC110502399 LOC106606289 coding upstream 38961 19008236 ~ 19040034 (+)
LOC110502398 LOC106576696 coding upstream 76785 18995593 ~ 19002210 (+)
LOC110503087 NA coding upstream 112468 18920198 ~ 18966527 (+)
LOC110502392 LOC105005759 coding upstream 259376 18805888 ~ 18819619 (+)
LOC110502403 LOC106606339 coding downstream 71830 19151185 ~ 19168638 (+)
calhm3 calhm3 coding downstream 89445 19168800 ~ 19171227 (+)
LOC110502405 LOC106606354 coding downstream 114562 19193917 ~ 19226992 (+)
LOC110502412 LOC106606477 coding downstream 418979 19498334 ~ 19505841 (+)
LOC110502413 LOC100136797 coding downstream 560851 19640206 ~ 19659354 (+)
G1838878 NA non-coding upstream 6239 19072458 ~ 19072756 (+)
G1838872 NA non-coding upstream 12551 19066224 ~ 19066444 (+)
G1838856 NA non-coding upstream 22008 19056749 ~ 19056987 (+)
G1838848 NA non-coding upstream 24916 19053688 ~ 19054079 (+)
G1838886 NA non-coding downstream 2506 19081861 ~ 19082762 (+)
G1838887 NA non-coding downstream 4257 19083612 ~ 19083875 (+)
G1838891 NA non-coding downstream 9494 19088849 ~ 19089849 (+)
G1838892 NA non-coding downstream 12476 19091831 ~ 19092119 (+)
G1838936 NA non-coding downstream 61122 19140477 ~ 19140691 (+)
G1838719 NA other upstream 129992 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 778719 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 1131620 17943337 ~ 17947408 (+)
G1836916 NA other upstream 1753635 17322174 ~ 17325360 (+)
G1836646 NA other upstream 1966168 17112370 ~ 17112827 (+)
G1839383 NA other downstream 442909 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 957768 20037044 ~ 20058237 (+)
G1839872 NA other downstream 984489 20062064 ~ 20064987 (+)
LOC110502429 ttc27 other downstream 1279442 20358591 ~ 20516930 (+)
G1840558 fbxo28 other downstream 1702510 20781865 ~ 20785203 (+)

Expression


Co-expression Network