G1839872


Basic Information

Item Value
gene id G1839872
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20062064 ~ 20064987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2106742
AGAGCATTAACATTATTTGTGAACTTATTTGTGAACACTTCCAGTAGGTCATCAAAAAGTATACACACAATATATACAGATCaatatgcatacatacatacagtagcaACTTCAGTCTGAGGATTTTATTGGCTGACTGGGCCCTGGCCTGCACATGTCATTAGAGACTTTTGTGTGAAGTCAGTCACCAGTATTAATCCACAACACAGAGCCATgaagtgtcccccccccccctctctctcctctcctatttgtCCTGAAGCTGAAAATATTGACTCATCCACTGCTCTTTGTCAAGACCACTGTGATCTAACAGAAACAGCCAGGCATACAAAGCACTGCTAATAACTGTCAAATATCTCTGTGCTGTTTTGCAAAGTGCATTTATTACAAACCATTCTGTGGTTGTTCGAGCAAACCTGATATCTGGAAATCTGTGAAAATACTTTTATGCCCttgccacagaaaaacacaatgGCACatgttaaaaatgtcaaataagACTGCATTTTTAGGTATATGAACTGTTAATTGCAAAACTCTGGGTTTGCTGAATTGCAGGTTTGGTTGAATGGACACCCCAATGGGTTTCATTGTAAATAAATGATGCAAGCAAAATAGTCTGTGATGGAGTTGACAGAGAAAGTTTCCTGATACCTTAACTATTAGTTTCATTATTTGCTCTTAAATGTATATTAACATTTTAAATTGAAATGCTCATGTCGAGATGGCTACCATTCTGAGAGATTGTTATTATTTCGCAATACATTGTTGGGTCATGTAGGTTACATAATGGATTATACAGTGCCCTCCTGAATTATTGGCACCCCAGGTGAACAAAAAAGGCTGTGAAAAAATGTAATTGTTGTTTATCAACTTGTTCTTACACTCCAAATATCATATGAACGTAACATTGAATTGAGTTAAAATtctaaaaacaaaaatgtttttaaaaaaatcaagaatttttttttttattctaaaaCATGCGTCAGAATTATTGCCACACCTAAAAATTCTTATTAAcaaaatcaaatgtatgtatATTCTGATCTTTGGGAACTCTTAACAGGTCATCCATGACAGGGGTATAAATATGAGGTGACACGCAGGCTAAATCCCTTAGTCATCCATCAACATGGACAAAAGGCTGTTGACCTTCACAAATCAGGCAATGGCTATAAAAAGATAGCTACATGCCTGAAAATACCAATGGcaataattaatacattttaaacaacTGGTGACTGTGATGAACCTGCCTCGAAGAGGATGCAAGTGTATTAAGAAGGATGGTTCAAGTGGCAAAAAAAATCTCCAAGGATAATAGTTGGAGAATTGCAGAAGGGTAACATCTTGGAGTCACCAAGTCTCCAAAACTACAATTAGACGCCACCAATGCCAAAAAGTTATTTGAAAGGCTTGCTAGAACAAAGCCTCTGCGGTTACCAAACCACAAACGTAAgcacttggagtttgctaaatgtCATTGGAAGTTTGATTGGAACCATGTTCTATGGTCTGATTAGACTACAATAGAGATTTTTGGCAACAAGGGTTTGGTGTAAAAAGAGAGCCATGGTCATGCAGAAAATAAGTATGGTGGTGGATCTGTGATGTTGTGGGGCTGTTTACTTccaaaaacgagagagagagattctgggttagagtccaggctctgttgcagccggctgtgaccggaagacccatggggcggcgcacaattgggtcagcgtcatctgggttaggggagggtttggccagcagggatgtccttgtcccatcacacactagcaactcctgtggctggctgggcacagtgcatgctgacacggttgccaggtgtttggtgtttcctccaacacattggtgcggctggcttccgggttaagtgggcattgtgtcaagaagcagtgcagcttggttgggttgtgtttcggaggacacacggctctcaaccttcacctctcccgagtccatacgggagttgcagcgatgagacaagactataactaccaattggataacaagaaaatggggtaaaaaaaatatattttaaaataatacATTCTTTGGGAATGtattaaagtaaaagttgtcaaaaacagaaatagtaaagtacagataccccccaaagatgacttaagtactttacaccactggttaggATACATGGCATCATGGGCTCACTCCAAGTACCGGGAGATTTTAGGCAAAAACCTgtctgcctctgccaggaggctaaAACTGGGTCGTCGTtggatcttccagcaggacaacaatCCAAAGCAAACCTCCAAATCCACAAGAAAATGGTTCACTGACCATAGAATCAAGCTTTTGCGATGGCCATCCCAGTCCCCTGACCTAAACCCTACTGAAAACCTGTGGGGTGAGCTGAAGAGGGGAGTCCACAAGCGAGGACCAAGGATCTGGAGGAATGGTCTCAAATCGCTTCCTGTGTTCTCCCACCCCATCAAACATTACTAGACAactcagagctgttatcttggAAAGGGGAGGGTGCTCAAAGAACTAAATGCAGAGGTGCCAATAATTGAAGATATGcatgtttgtttaaaaaaaaaaaacaggatagATTCATATATTTTGAGTGTAAGATTAAGCTGATAAACAACTTTTTTCCCTAGCCTTTT
>TU2106744
ccatcacacactagcaactcctgtggctggctgggcacagtgcatgctgacacggttgccaggtgtttggtgtttcctccaacacattggtgcggctggcttccgggttaagtgggcattgtgtcaagaagcagtgcagcttggttgggttgtgtttcggaggacacacggctctcaaccttcacctctcccgagtccatacgggagttgcagcgatgagacaagactataactaccaattggataacaagaaaatggggtaaaaaaaatatattttaaaataatacATTCTTTGGGAATGtattaaagtaaaagttgtcaaaaacagaaatagtaaagtacagataccccccaaagatgacttaagtactttacaccactggttaggATACATGGCATCATGGGCTCACTCCAAGTACCGGGAGATTTTAGGCAAAAACCTgtctgcctctgccaggaggctaaAACTGGGTCGTCGTtggatcttccagcaggacaacaatCCAAAGCAAACCTCCAAATCCACAAGAAAATGGTTCACTGACCATAGAATCAAGCTTTTGCGATGGCCATCCCAGTCCCCTGACCTAAACCCTACTGAAAACCTGTGGGGTGAGCTGAAGAGGGGAGTCCACAAGCGAGGACCAAGGATCTGGAGGAATGGTCTCAAATCGCTTCCTGTGTTCTCCCACCCCATCAAACATTACTAGACAactcagagctgttatcttggAAAGGGGAGGGTGCTCAAAGAACTAAATGCAGAGGTGCCAATAATTGAAGATATGcatgtttgtttaaaaaaaaaaaacaggatagATTCATATATTTTGAGTGTAAGATTAAGCTGATAAACAACTTTTTTCCCTAGCCTTTTTTGTTCATATTTACCTAGGGTGTAGAGATGAATATATTGGTCATTTGTTTATATTAGAACTCTAttgcacacatgcacaaacatgtgtgtgtgtgtgtgcccatgttggtgtgtgtgcctTCTGACATGTATGTAATTGGTTTGTGTGTATATCAACTACTTACTAACTGGTACACAAAAACAAATGTTGACCTTTTATATTCTGGACTGGTTGTTTACCTGTAAAGTGTGCTGATTGTGTAATATATGTTGATACTCAGTGGGGAT
>TU2106747
ccatcacacactagcaactcctgtggctggctgggcacagtgcatgctgacacggttgccaggtgtttggtgtttcctccaacacattggtgcggctggcttccgggttaagtgggcattgtgtcaagaagcagtgcagcttggttgggttgtgtttcggaggacacacggctctcaaccttcacctctcccgagtccatacgggagttgcagcgatgagacaagactataactaccaattggataacaagaaaatggggtaaaaaaaatatattttaaaataatacATTCTTTGGGAATGtattaaagtaaaagttgtcaaaaacagaaatagtaaagtacagataccccccaaagatgacttaagtactttacaccactggttaggATACATGGCATCATGGGCTCACTCCAAGTACCGGGAGATTTTAGGCAAAAACCTgtctgcctctgccaggaggctaaAACTGGGTCGTCGTtggatcttccagcaggacaacaatCCAAAGCAAACCTCCAAATCCACAAGAAAATGGTTCACTGACCATAGAATCAAGCTTTTGCGATGGCCATCCCAGTCCCCTGACCTAAACCCTACTGAAAACCTGTGGGGTGAGCTGAAGAGGGGAGTCCACAAGCGAGGACCAAGGATCTGGAGGAATGGTCTCAAATCGCTTCCTGTGTTCTCCCACCCCATCAAACATTACTAGACAactcagagctgttatcttggAAAGGGGAGGGTGCTCAAAGAACTAAATGCAGAGGTGCCAATAATTGAAGATATGcatgtttgtttaaaaaaaaaaaacaggatagATTCATATATTTTGAGTGTAAGATTAAGCTGATAAACAACTTTTTTCCCTAGCCTTTT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2106742 False 2657 lncRNA 0.41 1 20062064 20064720
TU2106744 False 1144 TUCP 0.42 1 20063844 20064987
TU2106747 True 877 TUCP 0.44 1 20063844 20064720

Neighbor

gene id symbol gene type direction distance location
LOC110502420 slc18a2 coding upstream 3827 20037044 ~ 20058237 (+)
LOC110502419 kcnk18 coding upstream 30781 20008638 ~ 20031283 (+)
LOC110502418 pla2g4f coding upstream 67168 19937700 ~ 19994896 (+)
eno4 eno4 coding upstream 243336 19767745 ~ 19818728 (+)
LOC110503088 NA coding upstream 389609 19669130 ~ 19732445 (+)
LOC110502423 LOC106606565 coding downstream 82887 20147607 ~ 20156413 (+)
LOC110502425 LOC106606648 coding downstream 139758 20204478 ~ 20207839 (+)
LOC110502424 LOC106606575 coding downstream 143898 20208618 ~ 20349384 (+)
LOC110502429 ttc27 coding downstream 293871 20358591 ~ 20516930 (+)
LOC110502431 ltbp1 coding downstream 454091 20518811 ~ 20662857 (+)
G1839747 NA non-coding upstream 169450 19891684 ~ 19892614 (+)
G1839765 NA non-coding upstream 204206 19857585 ~ 19857858 (+)
G1839760 NA non-coding upstream 207306 19854529 ~ 19854758 (+)
G1839753 NA non-coding upstream 215412 19846438 ~ 19846652 (+)
G1840104 NA non-coding downstream 15788 20080508 ~ 20080832 (+)
G1840108 NA non-coding downstream 19328 20084048 ~ 20084400 (+)
G1840116 NA non-coding downstream 30598 20095318 ~ 20095694 (+)
G1840122 NA non-coding downstream 36049 20100769 ~ 20101115 (+)
G1840128 NA non-coding downstream 51520 20116240 ~ 20116439 (+)
G1839383 NA other upstream 539052 19522264 ~ 19523012 (+)
G1838719 NA other upstream 1113061 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 1761788 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 2114689 17943337 ~ 17947408 (+)
G1840558 fbxo28 other downstream 717145 20781865 ~ 20785203 (+)
G1844044 LOC106607169 other downstream 3280324 23345044 ~ 23346489 (+)
G1845108 NA other downstream 4261544 24326264 ~ 24354246 (+)
G1849208 LOC106607606 other downstream 7209618 27274338 ~ 27276259 (+)
G1839723 NA non-coding upstream 265731 19796185 ~ 19798113 (+)

Expression


Co-expression Network