G1840169


Basic Information

Item Value
gene id G1840169
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20068017 ~ 20068926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2107070
ccaaatagggctaagtccatattatggcaagaacagctcaaataagcaaagagaaacttcagtccgtcattactttaagacatgaaggtccgtcaatctggaacatttcaagacctttgaaagtttcttcaagggcagtcacaaaaaccatcaagcactatgatgaaactggctctcatgaggactgtcacaggaaaggaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcagaaattgcagcccaaataaatgcttcactgagttcaagtaacagacacatttcaacatcaactgtttagaggagactgtgtgaatcaggtcttcatggtcaaattgctgcaaacaaaccactactaaaggacatcaataataaggaaacttgctttggccaagaaacacgagcaatggacattaaacattaaactggtcctttgatctgatgagtccaaatgttttatttttggttccaaccgccgtgtctttgtgagatgcagagtaggtgaacggatgatctccgcatatgtggttcccaccgtgaagtatggaggagatggtgtgggggtgctttgctggtgacaatgttggtgatttatttagaattcaaagcacacttaaccagcatggctaccacagcattctgcagcgatacgccagtcccactaagcgcaaaccagatgggatatcatttgtttttcaacaggacaatggctgcctattttaccaagaaggagagtgattgagtgcttcatcagttgacctggcctcaataatcccctgacctcaacccaatttagatgatttgggatgagttggactgcagagtgaaggaaaaacagccaacaagtgctcaggatatgtggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2107070 True 886 lncRNA 0.43 2 20068017 20068926

Neighbor

gene id symbol gene type direction distance location
LOC110502416 vax1 coding downstream 112071 19944035 ~ 19955946 (-)
LOC100136607 LOC100136607 coding downstream 140150 19891713 ~ 19927867 (-)
LOC110503056 NA coding downstream 186866 19879021 ~ 19881151 (-)
hspa12a LOC106606490 coding downstream 342641 19678988 ~ 19725376 (-)
LOC110502410 LOC106606442 coding downstream 436968 19505830 ~ 19631049 (-)
LOC110502421 pdzd8 coding upstream 271 20069197 ~ 20136003 (-)
LOC110502422 LOC106606541 coding upstream 87477 20156403 ~ 20169212 (-)
LOC110502426 NA coding upstream 233367 20302293 ~ 20306390 (-)
LOC110502434 LOC106606739 coding upstream 696255 20765181 ~ 20774451 (-)
LOC110502435 LOC106606749 coding upstream 711854 20780780 ~ 20795640 (-)
G1840170 NA non-coding downstream 65 20067527 ~ 20067952 (-)
G1840167 NA non-coding downstream 653 20065554 ~ 20067364 (-)
G1840096 NA non-coding downstream 6002 20061296 ~ 20062015 (-)
G1839974 NA non-coding downstream 207764 19860017 ~ 19860253 (-)
G1839962 NA non-coding downstream 222673 19844927 ~ 19845344 (-)
G1840171 NA non-coding upstream 4849 20073775 ~ 20074013 (-)
G1840173 NA non-coding upstream 5888 20074814 ~ 20075026 (-)
G1840185 NA non-coding upstream 20813 20089739 ~ 20090077 (-)
G1840192 NA non-coding upstream 31446 20100372 ~ 20100575 (-)
LOC110502408 LOC106606370 other downstream 682975 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 946674 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 1213845 18849389 ~ 18854222 (-)
LOC110502361 LOC106605890 other downstream 2337505 17725263 ~ 17781515 (-)
G1837980 NA other downstream 2348813 17709772 ~ 17719204 (-)
G1841694 NA other upstream 874381 20943307 ~ 20943615 (-)
G1841959 NA other upstream 1276588 21345514 ~ 21371799 (-)
G1843946 NA other upstream 3114061 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 3146559 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 3276165 23344353 ~ 23358461 (-)

Expression


Co-expression Network