G1840122


Basic Information

Item Value
gene id G1840122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20100769 ~ 20101115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2107023
GACTTTCACTAGCGATGTATTTTGTATGCAAGAAAAAGCAAGCATGCTATCATTAACTTAGAGGTTTCTCACCGTCTGTTGGTAGTAACCAGACAGAAAGTAGCCAAAACTAAGAGAACATAAAGAACATGATAGGCAGTTTAAAGAGATCCTGTTGCAATTTGCAATCGATCAAATATTCATCCGGACCTGTGCACTGTACATTTCAGGCCTATGTAGAATATCCTGATATTCCTCTGAATATCAACAACCTTTTTTTCCTTAAAAATGCATTGCCTATCCCCCAAAAACTAAGACCTTGCAGTTTGGTTGCATTTGGCACCATCCCAATGGAATTCCACATAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2107023 True 347 lncRNA 0.39 1 20100769 20101115

Neighbor

gene id symbol gene type direction distance location
LOC110502420 slc18a2 coding upstream 42532 20037044 ~ 20058237 (+)
LOC110502419 kcnk18 coding upstream 69486 20008638 ~ 20031283 (+)
LOC110502418 pla2g4f coding upstream 105873 19937700 ~ 19994896 (+)
eno4 eno4 coding upstream 282041 19767745 ~ 19818728 (+)
LOC110503088 NA coding upstream 428314 19669130 ~ 19732445 (+)
LOC110502423 LOC106606565 coding downstream 46492 20147607 ~ 20156413 (+)
LOC110502425 LOC106606648 coding downstream 103363 20204478 ~ 20207839 (+)
LOC110502424 LOC106606575 coding downstream 107503 20208618 ~ 20349384 (+)
LOC110502429 ttc27 coding downstream 257476 20358591 ~ 20516930 (+)
LOC110502431 ltbp1 coding downstream 417696 20518811 ~ 20662857 (+)
G1840116 NA non-coding upstream 5075 20095318 ~ 20095694 (+)
G1840108 NA non-coding upstream 16369 20084048 ~ 20084400 (+)
G1840104 NA non-coding upstream 19937 20080508 ~ 20080832 (+)
G1839872 NA non-coding upstream 36049 20062064 ~ 20064987 (+)
G1839747 NA non-coding upstream 208155 19891684 ~ 19892614 (+)
G1840128 NA non-coding downstream 15125 20116240 ~ 20116439 (+)
G1840130 NA non-coding downstream 18571 20119686 ~ 20119916 (+)
G1840131 NA non-coding downstream 19125 20120240 ~ 20120589 (+)
G1840137 NA non-coding downstream 28451 20129566 ~ 20129915 (+)
G1840140 pdzd8 non-coding downstream 33299 20134414 ~ 20135399 (+)
G1839383 NA other upstream 577757 19522264 ~ 19523012 (+)
G1838719 NA other upstream 1151766 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 1800493 18269654 ~ 18300278 (+)
G1840558 fbxo28 other downstream 680750 20781865 ~ 20785203 (+)
G1844044 LOC106607169 other downstream 3243929 23345044 ~ 23346489 (+)
G1845108 NA other downstream 4225149 24326264 ~ 24354246 (+)
G1849208 LOC106607606 other downstream 7173223 27274338 ~ 27276259 (+)

Expression


Co-expression Network