XLOC_037632 (desma)


Basic Information

Item Value
gene id XLOC_037632
gene name desma
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7515864 ~ 7539326 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073895
CATTCACACAGCGTACAAACCCAACAGGCCCAGTCATGAGCACAAAATATTCAGCCTCCGCCGAGTCGGCGTCCTCTTACCGCCGCACCTTTGGCTCAGGTTTGGGCTCCTCTATTTTCGCCGGCCACGGTTCCTCAGGTTCCTCTGGCTCCTCAAGACTGACCTCCAGAGTTTACGAGGTGACCAAGAGCTCCGCTTCTCCCCATTTTTCCAGCCACCGTGCGTCCGGCTCTTTCGGAGGTGGCTCGGTGGTCCGTTCCTACGCTGGCCTTGGTGAGAAGCTGGATTTCAATCTGGCTGATGCCATAAACCAGGACTTCCTCAACACGCGTACTAATGAGAAGGCCGAGCTCCAGCACCTCAATGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTCGAGCAGCAGAACTCTGCCCTGACGGTGGAGATTGAGCGTCTGCGGGGTCGCGAGCCCACCCGTATTGCAGAGCTGTACGAGGAGGAGATGAGAGAGCTGCGCAGACAGGTGGAggcactgaccaatcagagatcCCGTGTGGAGATCGAGAGGGACAACCTAGTCGATGACCTACAGAAACTGAAGCTCAGACTTCAAGAGGAGATCCACCAGAAAGAGGAAGCTGAAAACAACCTTTCTGCTTTCAGAGCTGATGTCGATGCTGCCACTCTGGCCAGGCTGGACCTGGAAAGACGTATCGAGGGTCTTCACGAAGAGATTGCATTCCTCAGGAAGATTCATGAGGAGGAGATCCGTGAGCTGCAGAACCAAATGCAGGAGAGTCAGGTGCAAATCCAAATGGACATGTCCAAACCAGACCTGACTGCGGCCCTCAGAGACATTCGCCTGCAGTACGAGGCTATCGCTGCCAAGAATATCAGCGAGGCCGAGGACTGGTATAAGTCTAAGGTTTCAGATTTGAACCAGGCAGTGAACAAGAATAACGAGGCTCTCAGAGAAGCCAAGCAGGAGACCATGCAGTTCCGTCACCAGCTCCAGTCCTACACCTGCGAGATTGACTCTCTCAAGGGCACCAATGAGTCTCTGAGGAGGCAAATGAGTGAGATGGAGGAGCGGCTGGGACGTGAGGCCGGTGGTTATCAGGACACTATCGCCCGTCTCGAGGCTGAGATCGCAAAAATGAAAGACGAGATGGCCCGCCACCTCCGCGAGTACCAGGATCTGCTGAATGTGAAGATGGCTCTGGATGTGGAGATCGCCACCTACAGGAAGCTTTTGGAAGGAGAGGAGAGCAGGATCTCGCTGCCCGTGCAGTCCTTTTCATCCCTGAGTTTCAGAGAGAGCAGTCCAGAGcagcaccaccaccagcagcagcaacCACAACGCTCATCTGAAGTCCACTCCAAGAAAACAGTCCTGATCAAGACCATCGAGACCCGCGATGGCGAgGTCGTCAGCGAGTCCACACAGCACCAGCAGGACGTCATGTAAAGCTTGAGAAACAGATCGAGTTTACAGAATGCCTTGCATTTTCACTGATGGCCTCAGGCTTTTTTAAGCACACACCCAGTATTGCCGTGACCCATTACCGCATGTGTGGATGACGCATGGAGACAAAAGGAAAGTGAGCTGAAAAACCAGAGGGAGGAAAAGTGGAATGGTGTGATGCTGAGCGTTCAGAAAGTGGCCAGATGAGCTCAGAGTTTCTGATTTAATgaatgtatgtgtgcgtgtgtgtgtggttgggTCATATCTGAGACACTGTTCCAcagcaacaaaaacaataaaattcaCTGTATTTTCTCCTA
>TCONS_00073896
ATTCTTCCACACAGTCCTCAGAGACCCAGCATTCACACAGCGTACAAACCCAACAGGCCCAGTCATGAGCACAAAATATTCAGCCTCCGCCGAGTCGGCGTCCTCTTACCGCCGCACCTTTGGCTCAGGTTTGGGCTCCTCTATTTTCGCCGGCCACGGTTCCTCAGGTTCCTCTGGCTCCTCAAGACTGACCTCCAGAGTTTACGAGGTGACCAAGAGCTCCGCTTCTCCCCATTTTTCCAGCCACCGTGCGTCCGGCTCTTTCGGAGGTGGCTCGGTGGTCCGTTCCTACGCTGGCCTTGGTGAGAAGCTGGATTTCAATCTGGCTGATGCCATAAACCAGGACTTCCTCAACACGCGTACTAATGAGAAGGCCGAGCTCCAGCACCTCAATGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTCGAGCAGCAGAACTCTGCCCTGACGGTGGAGATTGAGCGTCTGCGGGGTCGCGAGCCCACCCGTATTGCAGAGCTGTACGAGGAGGAGATGAGAGAGCTGCGCAGACAGGTGGAggcactgaccaatcagagatcCCGTGTGGAGATCGAGAGGGACAACCTAGTCGATGACCTACAGAAACTGAAGCTCAGACTTCAAGAGGAGATCCACCAGAAAGAGGAAGCTGAAAACAACCTTTCTGCTTTCAGAGCTGATGTCGATGCTGCCACTCTGGCCAGGCTGGACCTGGAAAGACGTATCGAGGGTCTTCACGAAGAGATTGCATTCCTCAGGAAGATTCATGAGGAGGAGATCCGTGAGCTGCAGAACCAAATGCAGGAGAGTCAGGTGCAAATCCAAATGGACATGTCCAAACCAGACCTGACTGCGGCCCTCAGAGACATTCGCCTGCAGTACGAGGCTATCGCTGCCAAGAATATCAGCGAGGCCGAGGACTGGTATAAGTCTAAGGTTTCAGATTTGAACCAGGCAGTGAACAAGAATAACGAGGCTCTCAGAGAAGCCAAGCAGGAGACCATGCAGTTCCGTCACCAGCTCCAGTCCTACACCTGCGAGATTGACTCTCTCAAGGGCACCAATGAGTCTCTGAGGAGGCAAATGAGTGAGATGGAGGAGCGGCTGGGACGTGAGGCCGGTGGTTATCAGGACACTATCGCCCGTCTCGAGGCTGAGATCGCAAAAATGAAAGACGAGATGGCCCGCCACCTCCGCGAGTACCAGGATCTGCTGAATGTGAAGATGGCTCTGGATGTGGAGATCGCCACCTACAGGAAGCTTTTGGAAGGAGAGGAGAGCAGGATCTCGCTGCCCGTGCAGTCCTTTTCATCCCTGAGTTTCAGAGAGAGCAGTCCAGAGcagcaccaccaccagcagcagcaacCACAACGCTCATCTGAAGTCCACTCCAAGAAAACAGTCCTGATCAAGACCATCGAGACCCGCGATGGCGAgACTAGGACAACTAGTGAGGGCATGAGCGCTCTCAGTGCTCAGCGTGTCGTCAGCGAGTCCACACAGCACCAGCAGGACGTCATGTAAAGCTTGAGAAACAGATCGAGTTTACAGAATGCCTTGCATTTTCACTGATGGCCTCAGGCTTTTTTAAGCACACACCCAGTATTGCCGTGACCCATTACCGCATGTGTGGATGACGCATGGAGACAAAAGGAAAGTGAGCTGAAAAACCAGAGGGAGGAAAAGTGGAATGGTGTGATGCTGAGCGTTCAGAAAGTGGCCAGATGAGCTCAGAGTTTCTGATTTAATgaatgtatgtgtgcgtgtgtgtgtggttgggTCATATCTGAGACACTGTTCCAcagcaacaaaaacaataaaattcaCTGTATTTTCTCCTA
>TCONS_00073897
TGAGAAGCTGGATTTCAATCTGGCTGATGCCATAAACCAGGACTTCCTCAACACGCGTACTAATGAGAAGGCCGAGCTCCAGCACCTCAATGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTCGAGCAGCAGAACTCTGCCCTGACGGTGGAGATTGAGCGTCTGCGGGGTCGCGAGCCCACCCGTATTGCAGAGCTGATGTCGATGCTGCCACTCTGGCCAGGCTGGACCTGGAAAGACGTATCGAGGGTCTTCACGAAGAGATTGCATTCCTCAGGAAGATTCATGAGGAGGAGATCCGTGAGCTGCAGAACCAAATGCAGGAGAGTCAGGTGCAAATCCAAATGGACATGTCCAAACCAGACCTGACTGCGGCCCTCAGAGACATTCGCCTGCAGTACGAGGCTATCGCTGCCAAGAATATCAGCGAGGCCGAGGACTGGTATAAGTCTAAGGTTTCAGATTTGAACCAGGCAGTGAACAAGAATAACGAGGCTCTCAGAGAAGCCAAGCAGGAGACCATGCAGTTCCGTCACCAGCTCCAGTCCTACACCTGCGAGATTGACTCTCTCAAGGGCACCAATGAGTCTCTGAGGAGGCAAATGAGTGAGATGGAGGAGCGGCTGGGACGTGAGGCCGGTGGTTATCAGGACACTATCGCCCGTCTCGAGGCTGAGATCGCAAAAATGAAAGACGAGATGGCCCGCCACCTCCGCGAGTACCAGGATCTGCTGAATGTGAAGATGGCTCTGGATGTGGAGATCGCCACCTACAGGAAGCTTTTGGAAGGAGAGGAGAGCAGGATCTCGCTGCCCGTGCAGTCCTTTTCATCCCTGAGTTTCAGAGGTAAGC

Function

symbol description
desma Acts upstream of or within several processes, including heart contraction; regulation of cardiac muscle contraction by calcium ion signaling; and sarcomere organization. Located in Z disc. Is expressed in several structures, including cardiovascular system; hindbrain neural plate; mesoderm; musculature system; and pectoral fin. Used to study myofibrillar myopathy 1. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human DES (desmin).

GO:

id name namespace
GO:0010882 regulation of cardiac muscle contraction by calcium ion signaling biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0007626 locomotory behavior biological_process
GO:0055117 regulation of cardiac muscle contraction biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060047 heart contraction biological_process
GO:0005882 intermediate filament cellular_component
GO:0030018 Z disc cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-221 Acts upstream of or within several processes, including heart contraction; regulation of cardiac muscle contraction by calcium ion signaling; and sarcomere organization. Located in Z disc. Is expressed in several structures, including cardiovascular system; hindbrain neural plate; mesoderm; musculature system; and pectoral fin. Used to study myofibrillar myopathy 1. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human DES (desmin).

Ensembl:

ensembl_id ENSDARG00000058656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073895 False 1774 mRNA 0.53 9 7515864 7539297
TCONS_00073896 False 1848 mRNA 0.53 10 7515864 7539326
TCONS_00073897 True 859 processed_transcript 0.55 6 7522435 7539023

Neighbor

gene id symbol gene type direction distance location
XLOC_037631 NA coding downstream 10333 7499260 ~ 7505531 (-)
XLOC_037630 bin1a coding downstream 71111 7410798 ~ 7444753 (-)
XLOC_037629 slc23a3 coding downstream 121452 7394229 ~ 7394412 (-)
XLOC_037628 slc23a3 coding downstream 125476 7390207 ~ 7390388 (-)
XLOC_037627 slc23a3 coding downstream 137298 7371962 ~ 7378566 (-)
XLOC_037633 dnajb2 coding upstream 82296 7621622 ~ 7655301 (-)
XLOC_037634 tuba8l3 coding upstream 123312 7662638 ~ 7673856 (-)
XLOC_037635 si:ch73-199e17.1 coding upstream 138810 7678136 ~ 7684002 (-)
XLOC_037636 NA coding upstream 402443 7941769 ~ 7942597 (-)
XLOC_037637 NA coding upstream 621015 8160341 ~ 8163995 (-)
XLOC_037626 BX942813.1 non-coding downstream 156380 7357819 ~ 7359484 (-)
XLOC_037618 BX842683.1 non-coding downstream 798063 6717677 ~ 6717801 (-)
XLOC_037614 NA non-coding downstream 967068 6531549 ~ 6548796 (-)
XLOC_037613 FQ377643.1 non-coding downstream 1106593 6409157 ~ 6409271 (-)
XLOC_037638 NA non-coding upstream 744829 8284155 ~ 8286208 (-)
XLOC_037644 BX537313.1 non-coding upstream 1469797 9009123 ~ 9024269 (-)
XLOC_037645 NA non-coding upstream 1487057 9026383 ~ 9050515 (-)

Expression


Co-expression Network