G1841470 (ltbp1)


Basic Information

Item Value
gene id G1841470
gene name ltbp1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20652789 ~ 20658335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2108517
GATCATAATCGGTCAAGGACAAAGTCATTATAACAGTAGAGTTGATAGATGGACATGAGTGCTGGTGTGGAAGGGTTGTATTGTTGAACCTGTGTTCTTCAGGGGGCAAAGGGCACAGTCCATGCCCCAGGCCTCTCCATGCAGACAGCAGCACTCTGTGAAGGTGGTCTTTCTGTTGGCTAGGGGCTTGGTGCAAGTCTTCCGGGTGCCCGTTACCGTCTGCCAGCAAATACCCTGGTAGTCAGTCTGCACAGAGTGTTGCTCAGCCACTTCAGGGGCGATCACGCAGCGCTTGTTGTCAGAGTCCAACACCATGGGGCGGGTACAGAAACACATGTAGGAGCCCTGTGTGTTCAAACACTCTCCTCCCACACAGCTCGACTCATCCTGACACTCATCGATGtCTCTGCACTGCAGCTTGACCTCGTCGTAGTACAGGCCAGTCTTACAGTAACACTCGTAGCTCCCTGGGCTGTTGAGGCAGAAGCCATCCTTACAGATCTCCTGGCCAAACAACGCACATTCATCTGCATCTTTATAACTCTCGGCTGCGGTCACTCCGAACACAGCGTCACCAGTGGGGACATTGCCTCTCCCAGCTGGACACATCTGGGAAAACTGATCGGTGCCCTGGACGGGGCAGGGGTGCACCTCACAGTTGTCCCCCCAGCCTGCCCCCAGCGTACAGCAGCACTCCTCCATGGTGACACTGCTGGTCAGCACGTTCTCACACAGGTTCTCATCATTGAGGTTGTAGTAACACTCCTTCCTCTCTACTGACGAGGCTGGGGCAAACAGGGGAGAAGAAACATGATTACACATGAATAGATCAACAATAAGTGTTCAGTAATATTTGCAGTTGTGGGCGTGAAGGAGTAACGCTTTTTCTTAACCCAGGAGGAATGA

Function

symbol description
ltbp1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human LTBP1 (latent transforming growth factor beta binding protein 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2108517 True 906 lncRNA 0.53 5 20652789 20658335

Neighbor

gene id symbol gene type direction distance location
LOC110502426 NA coding downstream 346399 20302293 ~ 20306390 (-)
LOC110502422 LOC106606541 coding downstream 483577 20156403 ~ 20169212 (-)
LOC110502421 pdzd8 coding downstream 516786 20069197 ~ 20136003 (-)
LOC110502416 vax1 coding downstream 696843 19944035 ~ 19955946 (-)
LOC100136607 LOC100136607 coding downstream 724922 19891713 ~ 19927867 (-)
LOC110502434 LOC106606739 coding upstream 106846 20765181 ~ 20774451 (-)
LOC110502435 LOC106606749 coding upstream 122445 20780780 ~ 20795640 (-)
polr1c rpac1 coding upstream 137835 20796170 ~ 20801471 (-)
si:dkey-191g9.7 LOC106606765 coding upstream 151802 20810137 ~ 20815145 (-)
LOC110502440 LOC106606775 coding upstream 174166 20832501 ~ 20849619 (-)
G1841394 NA non-coding downstream 240978 20394056 ~ 20411811 (-)
G1841334 LOC106606575 non-coding downstream 250557 20273007 ~ 20402232 (-)
G1840283 NA non-coding downstream 449562 20203004 ~ 20203227 (-)
G1840248 NA non-coding downstream 476098 20176480 ~ 20176691 (-)
G1841547 NA non-coding upstream 18480 20676815 ~ 20707882 (-)
G1841610 NA non-coding upstream 146052 20804387 ~ 20804679 (-)
G1841612 NA non-coding upstream 148281 20806616 ~ 20806961 (-)
G1841614 NA non-coding upstream 149908 20808243 ~ 20808453 (-)
G1841646 NA non-coding upstream 204077 20862412 ~ 20862668 (-)
LOC110502408 LOC106606370 other downstream 1267747 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 1531446 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 1798617 18849389 ~ 18854222 (-)
LOC110502361 LOC106605890 other downstream 2922277 17725263 ~ 17781515 (-)
G1837980 NA other downstream 2933585 17709772 ~ 17719204 (-)
G1841694 NA other upstream 284972 20943307 ~ 20943615 (-)
G1841959 NA other upstream 687179 21345514 ~ 21371799 (-)
G1843946 NA other upstream 2524652 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 2557150 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 2686756 23344353 ~ 23358461 (-)

Expression


Co-expression Network