G1840558 (fbxo28)


Basic Information

Item Value
gene id G1840558
gene name fbxo28
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20781865 ~ 20785203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2107504
TCTTTTAATGCGTCATTTGTACTTGTAACGGTAAAGTGTGCAACCCATACAGTTTGGCCAATTTACACTCTTATACATACATTATAATCCACAATCTACACTTTTAAGTACATGAAGTTTATAGAACACTCATTTCTAAACTGAGACGCTGTCTCAAATTAAGCCAATAGATAATTATTTCCTGCCCAGTCCGTTTAGAATACACGCTTGAGTCCACTGTTGTGAACTGCGTTTCCCAGTATGCTACACAGAGATTTCTTACGTTTCCAGCCGCATTTTGGGCTCAAGCTGAAAAGAGAACTGTGTGCTGAGATCTTGAAATTGGAAAGGTGCTATTGTGCAAGAGTTTATAGCAATCAGGGAGAATACTAAGACTTAAAAACCTTGTCACTTTTAGTTGAACTCCTTCCACAATGCATCTTCAGTAGGTCTTACATTGGTAGACAGACTACTGTAGTTGTACAACagtcatttggcaaatctgaataTTTCTTGAACAGATGAACTTCATGTTACATGGGAACTTTGTGTACAAAGACACCATAACAATAAGATCAGTAGGTCTAGATGACAACTGACTAAATACACTGGAGTGGAGACATTTTCTAAGTGGCAAATTTACCTTCGACCTCAGAATCACCAGTCTGGTCAATCAATACAGAGGGTCTTTTCTACCTCTTCGATAAAGCTTTGATTAATTTCCCCCAAAGACAGCAGATACTTGACTGCATATAAATCCCATTTTACAGACTAGTATTTGATCAATGACAGGCATTCGCAAAAAATACAGATAACGGGGGAGCAGAAATACTCTAGCCCTGAAGGAAGATTTCATGGTGTCCGAGAACTATTTTCAGAAATGATTGATCTCTGAAAACTATACGTCTAGTGGGATCCTATAGTTGTCCGATGTCAAGACTCCCTTAATTTCCCAGGCACCATGGCTTTAGATGTGCCCTCGGCTACATGATAAATAGCCACACTAGCCTGCCTGTCTTCAACGCAACATGGAGTGCCAGACTGCATCTTCATGTGGAACACAGAAATGCATTTAAAATCAAGTGTGTCATTTCACTAATGCTAGCTGAacagtgttcattacaacaggaACCCTCAAACTGTCCTTTTCATGAAGATGTGTGATCTCCCAGGACCTGGCTAAAATATGCAAATGTCCATTTTCTTTCAAAATAGAGACTAACTTCCTTTAATTTTACTGCGCCACATTTGGGATATAACCCTCTCGATGCAGGAATCAAATACTTTAAATTTAGCCCGTCTCAGAAAATGAAGAATATTGCTCAAGGATATTTTTCAAGcaatcccacctggccaacagaGAACAACACAATAAGAAATGACATTTGCATCAATAAGAACAAAATTGTCTGAGAGGCAGAATTTAAACATCCTTTATCCTGAATGGTCTCGTCTAGCCAATATTTCAAATGCATTTCTAACCAACCAAAGTCAACCTTTTCAGTAGTTAAGCGATACATATTAGAAAGCTCTCATTACTTCTTGCCTCACTGCAAAGACTCTCTCCCAACTAGGAGCCAACAACCTAATGTGGATTGACTTTTGTTGATGGACAAGAAAGAGTGAACACCAAAATTGGTGTTTGACTTTTCAAACTAACCTTAACCTTGTCAACTAGTGTGCAAATTCTTAGTGGCTTTAAGAGTCAGTGGTTAAACTGTGGAGACTACTGGCACTCTTGCCCAAATATGCTGGCCAAATCAGCATAAACATGTCCATGGTGTAGTTTCTGCAGGAATTTGAAAAGGATATGACAAAGGGATTCAACGCAAGGGAAACAGAGCAACTCCGGTCTCCTTTACCATGACCCCCCCCTCTCCTAAAGACATTCCAAACAATGATAATTAAAATAAATGTCACAGGACATGGTGGGATGTGCAATCaggcaaaaacaaaaaacattgtgtCCTATTTCTTGCTGCGCAGGCGTTTGGACTGGCGCGGGAGGTCTGAGCTCTTCCTGGTGCGTTTCAAGGGCGGGCTACCCACCGCACTGGTTGCCGTGGCGACATCAGCAGAAGACGTCGTGGCGACAGCAGAAGAGCCCGTCGTGGAAGAAGCTGCTGTGGTGGAGGTGGCTACGGCCGGCCTGGCACCTCCCCCCACCGCACTGTCCATCAGTTCCCTGAGCTTGTGCTCCAGCTCAGCCAGCCGGGCGTTCTGCTCCCCGATAACCTGAGTCTGCTCCAGCAACTTCTGCTCCTGGTCCTGCAGCTGCTTTTGCTGCTCCAGCTGCTTGACGCGCACCTCCTGATTCTCCCGCCGCAGCACCGTCATGGACGCCCCGTTCACCTTTACCTGCTGCTGCACCTTGGTCATCTCAGAGCGTGACGGCGTGTTCTTGGCCAGCAGGGACATGGTGGTCAGCCCCGGGAAGCCTTTTTTTCAGGATGGGGACGATCTTCTCATCAAAGTACTCCATGGCCATGGAAGAGATGTCCCGTAGCTCTTGCAGCACCTCATGAGCCCGCTGGGGCGCACGTGTAGAGTTCACATAGCGCAGCACACGGTAGATCTCATCAATCACCTTGCCAGGGATGAAGCAGCAAAGACTGGAGTCCACATATTTCATGAAGGTCATGTTGAGTAGCGAGAGACGCGTTTCTACAGCAGCCAGGATGTCAGCGTGACGGGCCAGTGAGTGGTTCCTCCGCTCCGAC

Function

symbol description
fbxo28 Predicted to be involved in protein polyubiquitination. Orthologous to human FBXO28 (F-box protein 28).

NR:

description
F-box only protein 28-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2107504 True 2699 TUCP 0.45 4 20781865 20785203

Neighbor

gene id symbol gene type direction distance location
LOC118943881 NA coding upstream 29613 20748898 ~ 20752252 (+)
LOC110503089 LOC104962710 coding upstream 33566 20741061 ~ 20748299 (+)
LOC110502432 LOC106606711 coding upstream 63034 20672414 ~ 20718831 (+)
LOC110502431 ltbp1 coding upstream 119008 20518811 ~ 20662857 (+)
LOC110502429 ttc27 coding upstream 264935 20358591 ~ 20516930 (+)
LOC110502437 LOC106606755 coding downstream 16300 20801503 ~ 20803802 (+)
si:ch211-51a6.2 LOC106606783 coding downstream 87666 20872869 ~ 20893097 (+)
LOC110502442 LOC106606791 coding downstream 115997 20901200 ~ 20942924 (+)
LOC110502443 LOC106606834 coding downstream 160997 20946200 ~ 21144084 (+)
LOC110502446 LOC106606915 coding downstream 533342 21318545 ~ 21460906 (+)
G1840547 NA non-coding upstream 19874 20761567 ~ 20761991 (+)
G1840546 NA non-coding upstream 21670 20759972 ~ 20760195 (+)
G1840333 NA non-coding upstream 368359 20413058 ~ 20413506 (+)
G1840350 NA non-coding upstream 395729 20381149 ~ 20386136 (+)
G1840572 NA non-coding downstream 18809 20804012 ~ 20804244 (+)
G1840575 NA non-coding downstream 21519 20806722 ~ 20806927 (+)
G1840576 NA non-coding downstream 22212 20807415 ~ 20807643 (+)
G1840616 NA non-coding downstream 77556 20862759 ~ 20862985 (+)
G1839872 NA other upstream 716878 20062064 ~ 20064987 (+)
LOC110502420 slc18a2 other upstream 741925 20037044 ~ 20058237 (+)
G1839383 NA other upstream 1258853 19522264 ~ 19523012 (+)
G1838719 NA other upstream 1832862 18948517 ~ 18949003 (+)
G1844044 LOC106607169 other downstream 2559841 23345044 ~ 23346489 (+)
G1845108 NA other downstream 3541061 24326264 ~ 24354246 (+)
G1849208 LOC106607606 other downstream 6489135 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 7205071 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 7216672 28001291 ~ 28078254 (+)

Expression


Co-expression Network