G1841688 (LOC106606791)


Basic Information

Item Value
gene id G1841688
gene name LOC106606791
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20927175 ~ 20928627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2108750
GCAGCCTCAAAGCCCAGCTCCTCGTCTCCAGGCATCTCGTTGTTCCGGTTACGGCTGGGAGGACGGGAACCTGTGGGGGAGACAACTGTACAAACTGGGGTACACAGCACATCAAATATGAAGCTGGCCAGCATGAGGGGCAGGACAGGCCTGTAGTCACAGAAGTTCCCGTCTCGGAGCTGCTCGGCCCTGTCCCGTATGGACGTCATCTCCACCAGGCCCAGAGGGATCTTCTTCAGCAGAGCCACCACCTCTGACTCCTGGTAGGCCAGCTTGACCTCCAGGGCCTTGGTGGAGGCTGGGGGCCTCTGCAGCTCCAGGGAGAACATGCCCGTGCTGAAGGCCAGGTTGTGGAGCTCCAGCCTCTCGCTCAGCACCGTCAGCAGGAAGGAGGTCTTGACCAGGGTGTTGGTGGCCACCTGGGTCTGCCTGCTGGTGGACACCTTGCTCTTCTTACCCTTCGTCTGGGGCTGCTCCACCTTCAGGTCTGGAGGGTTGGCCAGCAGGTCTCCAGCCAGCTCCACTGCCAGTCTGCAGGCCTCGTTGCTGTAGCCATGGGCGTGGAGGGCCTCTGCACATGCAAACAGCACCTCCATCTGGCCCTCCTGCTCCAGTGGCTTGATCCCAGCAAAGATGTCTGGTTCCTCCTCATGGTTGTTCTCTGgcactctctctgccccctcctcaGAGGCTGCATTTAGGTAGTAGGCCCGGTAGTCATCCTCTCCAACAGGGTCTCCCCCTGCCCCTGGGCTCTGATTGGGCAGGGCTACGGCTCCAGCTCCAGTTTCTCGGCGCCCACCCCGCGGTGGCTTGGCGGCAGCAGCAGTCACGGTAACAACAGCGACTGAGGTGGAGAGCCGAGCGTCTCCAGCGGGGGCCACCTCCTTATTTCCATTCACCTCCATCTCTACTTCCACCTCCTTCTCCAAGGCAACAGCCGCTTCCACGACGACAGCGGCGTTCTCCTTGAGGGGGAAGGCGGGCTGGGACTCAGTGGCAGGCAGGGTGGCAGCAAGAGTGACACGTTTGACCTCGAAGGAGCGCTCCTTGGGCATGTTTCCGGCCCCTTTCCCTCCCCCACTGTATTTGTGTGGCTCTCTGAGTAGCGGGCTTGGTGAGGGTAGCATCTCGGGTGGCGGGGGTGTGAAGTCAAAGGTGTTACTGGCCTCGGCGCCCAGCGCCAGACTGGAGCCATCATCCAGGCTCAGCTCGGCCATGTCAGGCTCCAGGGAGCTGTCCTCACTGCTGGTGCGCCGCTTGGCCG

Function

NR:

description
zinc finger SWIM domain-containing protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2108750 True 1267 lncRNA 0.62 2 20927175 20928627

Neighbor

gene id symbol gene type direction distance location
LOC110502440 LOC106606775 coding downstream 77556 20832501 ~ 20849619 (-)
si:dkey-191g9.7 LOC106606765 coding downstream 112030 20810137 ~ 20815145 (-)
polr1c rpac1 coding downstream 125704 20796170 ~ 20801471 (-)
LOC110502435 LOC106606749 coding downstream 131535 20780780 ~ 20795640 (-)
LOC110502434 LOC106606739 coding downstream 152724 20765181 ~ 20774451 (-)
LOC110502444 LOC106606853 coding upstream 216013 21144640 ~ 21285931 (-)
LOC110502445 NA coding upstream 369967 21298594 ~ 21304431 (-)
LOC110502447 LOC106606998 coding upstream 584344 21512971 ~ 21516875 (-)
LOC110502449 LOC106607006 coding upstream 595107 21523734 ~ 21528655 (-)
LOC110502450 LOC106607022 coding upstream 631373 21560000 ~ 21604318 (-)
G1841648 NA non-coding downstream 58703 20868153 ~ 20868472 (-)
G1841646 NA non-coding downstream 64507 20862412 ~ 20862668 (-)
G1841614 NA non-coding downstream 118722 20808243 ~ 20808453 (-)
G1841612 NA non-coding downstream 120214 20806616 ~ 20806961 (-)
G1841610 NA non-coding downstream 122496 20804387 ~ 20804679 (-)
G1841696 NA non-coding upstream 15980 20944607 ~ 20944893 (-)
G1841704 NA non-coding upstream 27304 20955931 ~ 20956148 (-)
G1841705 NA non-coding upstream 27640 20956267 ~ 20956522 (-)
G1841709 NA non-coding upstream 33024 20961651 ~ 20961899 (-)
G1841711 NA non-coding upstream 35272 20963899 ~ 20964168 (-)
LOC110502408 LOC106606370 other downstream 1542133 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 1805832 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 2073003 18849389 ~ 18854222 (-)
LOC110502361 LOC106605890 other downstream 3196663 17725263 ~ 17781515 (-)
G1837980 NA other downstream 3207971 17709772 ~ 17719204 (-)
G1841694 NA other upstream 14680 20943307 ~ 20943615 (-)
G1841959 NA other upstream 416887 21345514 ~ 21371799 (-)
G1843946 NA other upstream 2254360 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 2286858 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 2416464 23344353 ~ 23358461 (-)

Expression


Co-expression Network