G1842039


Basic Information

Item Value
gene id G1842039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21460956 ~ 21462159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2109123
gcattctctcaaccagcatcatgaggtagtcacctagaatgcattgcaattaacaggtgtgccttcttaaaagttcatttgtggaatttctttctttcttaattatttttagccaatcagttgtgttgtgacaaggtaggggtgatatacagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagctcaaataaacaaagagaaatgacagtccatcgttactttaagacatgattgtcagtcaatccggaacatttcaagaactttgaaagtttcttcaagtgcagttgcaaaaaccatcaagcactatgatgaaactgagttcaagtaacagacacatctcaacatcaactgttcagaggagattgcgtgaatcaggccttcatggttgaattgcttcaaagaaaccactactaaaggacaccaataataagaagatacttgTTTGGGTCAAGAATCAAAataaatggacattagaccggtggaaatctgtccaaatttgagatatttTGGTTCTAACCACCATGtcattgtgagacgcagagtagatgaacagatagttcccactgtgaagcatggaggaggaggtttgatggtgtggtggttctttgctggtgacactgtgatttatttagaattcaaggcacacttaatgaGCATGGCTACCCCAACACTCTGCAGCAATACtccaccccatctggtttgcgcttagtgggactatagtttatttttcaacaggacaatgactcaatacacacctccaggctgtgtaagggatatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggccaccacaatcacccaacctcaacccagttgagatggtttgggatgagttggaccacagagtgaaagaaaagcagccaacaagtgctcagcgtatgtgggaactccttcaagactgttgaaaaagcattccaggtgaagctggttgagagaatgccaatagtgtgcaaagctgtcatcaaggcaaagggaggctactttgaagaatgtcaaatgtaaaatatattttgatttgttaaacact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2109123 True 1084 lncRNA 0.41 2 21460956 21462159

Neighbor

gene id symbol gene type direction distance location
LOC110502445 NA coding downstream 156525 21298594 ~ 21304431 (-)
LOC110502444 LOC106606853 coding downstream 175025 21144640 ~ 21285931 (-)
LOC110502440 LOC106606775 coding downstream 611337 20832501 ~ 20849619 (-)
si:dkey-191g9.7 LOC106606765 coding downstream 645811 20810137 ~ 20815145 (-)
polr1c rpac1 coding downstream 659485 20796170 ~ 20801471 (-)
LOC110502447 LOC106606998 coding upstream 50812 21512971 ~ 21516875 (-)
LOC110502449 LOC106607006 coding upstream 61575 21523734 ~ 21528655 (-)
LOC110502450 LOC106607022 coding upstream 97841 21560000 ~ 21604318 (-)
LOC118943877 LOC106607043 coding upstream 198299 21660458 ~ 21663289 (-)
LOC110502452 LOC106607058 coding upstream 216041 21678200 ~ 21822311 (-)
G1842008 NA non-coding downstream 33069 21427462 ~ 21427887 (-)
G1841964 NA non-coding downstream 78695 21354681 ~ 21382261 (-)
G1841909 NA non-coding downstream 132670 21260825 ~ 21328286 (-)
G1841823 NA non-coding downstream 348538 21112208 ~ 21112418 (-)
G1841819 NA non-coding downstream 352853 21107896 ~ 21108103 (-)
G1842145 NA non-coding upstream 186087 21648246 ~ 21651632 (-)
G1842169 NA non-coding upstream 223922 21686081 ~ 21686343 (-)
G1842170 NA non-coding upstream 227137 21689296 ~ 21689536 (-)
G1842257 NA non-coding upstream 351491 21813650 ~ 21816666 (-)
G1842419 NA non-coding upstream 568298 22030457 ~ 22030728 (-)
G1841959 NA other downstream 89157 21345514 ~ 21371799 (-)
G1841694 NA other downstream 517341 20943307 ~ 20943615 (-)
LOC110502408 LOC106606370 other downstream 2075914 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 2339613 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 2606784 18849389 ~ 18854222 (-)
G1843946 NA other upstream 1720828 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 1753326 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 1882932 23344353 ~ 23358461 (-)
G1846858 NA other upstream 3977648 25439807 ~ 25440387 (-)
G1850441 NA other upstream 6612766 28074925 ~ 28078251 (-)

Expression


Co-expression Network