XLOC_037641 (col4a1)


Basic Information

Item Value
gene id XLOC_037641
gene name col4a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 8634229 ~ 8670158 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073909
GGTGAGGTTGGGCTCCCTGGTTTGATGGGCCTTGTTGGGTTTCCTGGAATGCAAGGTCATGAGGGCCCTCCAGGGTCAATGGGGCCAAAGggTGACAGAGGGGAGATAGGAGCACCAGGAATTAAAGGAAGCAGAGGCCtacctggtcaagctggtttccCAGGACGTCCAGGTATTCCAGGTCTTCCTGGTCTAGAAGGAGCACCTGGACCTCAAGGAATCCCAGGCTGCAATGGAACAAAGGGGGAGCGAGGATTTGATGGGATCCCAGGTATTACGGGATTGCTGGGACCACCGGTATTAAGGGAGGAAAGGTATGGAACTTGTTCTAAAGGTGATCCAGGTGGTGTTATTGGATTACCCATCCCTCTAAAAGGAGACAGAGGCTTGCCAGGACAACACGGTTTCCcaGGTCAAAAAGGTAATGCTGGACAACAAGGGCCTGTTGGTCCACCTGGACCTTATGGACCTCCGGGAAGACCAGGTGATCCTGGACAAAAAGGAGAGCCGGGTGACAAGCTGACCTTTATTGGTGAGAAAGGGGAAAAGGTGAGTTCTAGATTTTCTTACAGTATCGTGGGACAAAGAGGTTTAACCGGCCCCCCAGGTCCTCCAGGAAGGTCAGAGGAATACGAAGGCCCTGCCACAACACTTTATCTTCCTGGACCACCGGGTGAGACAGGCTCTACTGGAGACAAAGGAGACAAACATGGAATAAAAGGTGAACCAGGACCACCAGGGCCAATAGGGAAACCAGGGAAAGATGGACAGAGTGGAGAAAAGGGGGAAATCGGCTTCCCTGGTAATCCGGGACTTGATGGCTTCAAGGGTGACAAAGGAGAAAGAGGGCCACCAGGATATGGTGCTGGTTCTCCTGGCCCTCCTGGTCCTCCAGGCCTCCCTGGAGCAGAAGGAGAAACAGGTTTTCAAGGAGAGCCAGGAGCTCCTGGTCCCCCAGGCAGATATATCGAGGGTCCTCCTGGACCACCTGGCTTCCCTGGAGAGATTGGCAAGAAAGGAGAAAAAGGAGCCGATGGACGGTCTTTTCCAGGTCCCAAAGGAACTGATGGGCAACCTGGCCCACCCGGACCGCCAGGACCTATTAGCCCTCCGGGACCTCCAGGGTTGCAAGGAGAGGTGGGACAGAAAGGTGATCAAGGTGAAACATGCACAGAGTGCAATGCTTTTGGTCCCCCTGGTTTGCCTGGTCCTCAAGGGCCAAAGGGTCTGCAAGgtttTCCTGGACCAGCAGGTATTAAAGGCGAGAAGGGTTTGCCAGGGCCCAGTGGGCCAGCTGGAAATGCTGGTTTTAATGGTGCTCCAGGTTTGATGGGTAAACCTGGTGCTCAAGGTGAACCTGGTGATATATTTGTGGCTCCTGGGCTGAAGGGAGATAAGGGCTTACCTGGTACTACTGGAGACAGAGGATTCCCGGGTGTTGATGGGCTCCCAGGAAAAGATGGACGACCAGGATATCCTGGAACCAAGGGAGAGCCTGGTGATCGTGGCCCAGATGGAGATTTTGGAGTTCCTGGCCCTCCAGGCGAAAGAGGTCCCCCAGGTGAACCAGGTATAGGTCGGCCAGGTCAACCTGGAGATAAGGGCTCTGCAGGATTCCCTGGTGCACCAGGAAGGCCAGGACTACAAGGAGCTAAAGGTGAAGCTGGTAAAGTCATAAGTTTACCTGGGCCTCAGGGTGCCCCAGGGCCTCGTGGAGAGAGTGGTAGACCTGGTCTTCAAGGTGATAGAGGATTTCCAGGTGAACGTGGGGTTCCAGGATTCCCTGGAGATAAAGGTGACCCTGGACTGCCAGGAATTGGACTTCCAGGACCCCCGGGGCCAAAAGGGTACTCTGGTATTCCAGGACCAAGTGGAATCCCAGGAGAGTCTGGCGAACCAGGTCAGGATGGCTTACCTGGTCGCGCAGGAACACCTGGTCAAAAAGGTGAACCTGGCAGGGGTCTTCCTGGTCCTAAGGGTACTACAGGTCTACCAGGAGTGCCAGGATTTCCAGGGGAAAAGGGTAATACTGGAATGCCAGGGGTTCCTGGAACAGAAGGACGTACTGGGCCACCTGGACCTCAAGGACTTAAAGGTAACCCTGGACCACCTGGAGTCCATGGTGCACTAGGGCCACCAGGTCCTCCAGGACTGGGAGAACCTGGAGCTCCTGGACCAATGGGGCCACCTGGAGGCCCTGGACCTATTGGCCAGTCTGGAATAAAGGGTGACAAGGGTTATCAAGGACTACCTggtttggacatgcctggccCTCCAGGAGACAGAGGTAGCCCTGGTGTCCCAGGTCTACCAGGATCAAAGGGTTTGCCTGGGCAACCAGGAGTTCCTGGAAAAGATGGCTTTCCTGGCGAACGTGgTCCAAAAGGAGAAATTGGAATCATGGGAATGGCAGGACCACCAGGATTTCAAGGTTTAGTTGGAAATCCTGGAGATCCTGGGCAAAAGGGTGACCCAGGTATGCCTGGCATCAGAGGAGACTTTGGTGATTTAGGCACCAAGGGTGAGAGAGGAGAGCCGGGTCTACAGGGGCCACCTGGAAATATGAGTGATGTGGACATGGAACACATGAAAGGGGATAAAGGAGACATAGGAGACAGAGGTGATCCTGGTCCTACTGGAGAAAAGGGGTTTCCTGGAACATCTGGTGACCCTGGTATGCCAGGAAAAGATGGAATGCCAGGGTCACCTGGACAGCCAGGTGATAAAGGAGACCCTGGAATCATTGGAAAACCAGGAAGCATTGGAGAACCTGGAGACACAGGCGCTAGAGGAGACATGGGATACCCAGgttCAATGGGTCCAAAGGGTGCTAAAGGTGTTGGTGGTTCACCGGGTCACCCTGGTTTTAAGGGGACTGATGGCTCCAAAGGAGATAAAGGAGATCCTGGTGAACCAGGAATAGGAATCCCTGGTCCCCCTGGCACAAAGGGAAATATAGGCTCCCCTGGATTCCCTGGTGAGCCTGGAGAGAAGGGACAGAAGGGTACAATGGGTATGACAGGAACTCCTGGAACTCAAGGACATAAAGGAGACCAAGGATCGATTGGCAGTCCAGGGAAGCCTGGTGAGAAAGGTGTTGGTGGGTTGCCAGGGTCCCCAGGAGAACCTGGGACTCCAGGACGTCCAGGTGAGCCTGGTCTACAGGGTCCTCCAGGTCCCCATGGGGAAAAAGGTCAATCAGGGCAAGATGGCATTCCTGGATTCACTGGAGAGAGAGGGGAGCCTGGTGTACCAGGGAGAGGTTTGCCCGGATCTCGTGGAGAACCTGGCGGCAAAGGTGACAAAGGCAACCCTGGTCTTCCTGGCATTCCCGGGAGTCCAGGTATACCTGGAACCAAAGGTGATAAAGGTCTGTCAGGATTGCCAGGGGATCAAGGTCGACCTGGGGAGAGAGGACTTCCAGGACAAGCCATGGAGGGGCCTAAAGGGGACAGAGGAGACCAGGGACAGCCAGGAGAAAGAGGTGCAACTGGTGAACAAGGTCCACCTGGAATTCCAGGAAGTGCTGGATCAAAAGGAGAAAAGGGAGATGTGGGCTTCCAAGGCGCACCAGGCTCTCGGGGTTATAAAGGAGACAAAGGCTtcattggcgtttctGGTGAGCCTGGGTTGCCTGGTTATAATGGACCAAAGGGTGAGATGGGACCCCAGGGTGTTCCTGGTTTCCCTGGTACAAAGGGTGAACAAGGAGTGATTGGTTCTAAGGGTGAAGGAGGTGACAGAGGATTCCCAGGTCTTAAAGGTAGTGAAGGTCCCCCTGGACCCCCTGGACCACACACATATGTAAAGGGAGATCCAGGTCCTCCAGGACCACAGGGTCCCCAAGGTCTAGTTGGAATTCAAGGCTTCCCTGGGGCAAAAGGACAACAGGGTGTGATGGGACTCCAGGGTTTAAAAGGAAGCGATGGGACACCTGGCTATAATGGACATCCTGGGGCCAAAGGAGAGCCTGGACAAACTGGACCCCCCGGGCCTAGAGGGTACCCCGGACCCCCAGGGCCTGATGGTATTCCAGGTCATATCGGCCCTCCAGGCCCTTCCTCAATGGACCACGGCTTCCTTGTAACTCGCCACAGTCAGACTATTGATGTACCACATTGTCCACAGGGAACGACGCCAATCTATGATGGATATTCCCTGCTTTATGTCCAGGGCAATGAAAGGTCACATGGGCAAGATCTAGGTACAGCTGGTAGTTGCCTAAGGAAGTTCAGCCCAATGCCGTTCCTCTTCTGTAACATCAACAATGTTTGCAACTTTGCATCTCGTAATGACTATTCCTACTGGCTGACCACTCCAGAGCCCATGCCTATGAGCATGGCCCCCGTCACCGGCGAGAGCATCAAACCCTTCATCAGCAGATGTGCTGTGTGTGAGGCTCCTGCTATGGTTATAGCTGTGCACAGTCAGACCATACAAATTCCAAACTGTCCCGATGGCTGGGCTTCACTCTGGATTGGATACTCTTTCGTTATGCATACGAGCGCTGGTGCTGAGGGCTCCGGTCAGGCTTTGGCTTCTCCTGGCTCTTGTCTTGAAGAGTTCCGCTCGGCTCCCTTCATCGAGTGTCATGGTCGCGGCACCTGCAACTACTACGCCAATTCTTACAGCTTCTGGTTAGCCACCATAGAAGACACAGATATGTTTACGAAACCAGTCCCTGCAACATTAAAGGCCGGAAGTCTAAGAACTCACATCAGCAGGTGTCAAGTGTGCATGAAGAGGGTATAATCCTGCCTCAGCGCTCTTTCTCATCcagttttatgaacaaaacaactAATGTACTGTTTGGTGCTACTTCTATGAAAAGCCATAGAAAAACTTCAAGAACACATTTGCGTCTCTACATTTATAAGCAATGGAACCTCAAAGATTTCCCGGCACATTTGCTTCattcaaaaaaaaagtgttaactaAGGCAGTTCCATCGTGCCTAATGAATGACGCCTGTTTACACTTGCACTGAGTATATGGATAAGTAAGCAGGTAACCATCTTCCAAAACATTATGATTTGTACACTTTTCCGTCCAACACTCTTTACGtattttatttcatctttaaTTATCATGCCACTCAACGATATCAGATGCAGATATCTTTTTCTCtctaaaaaaaagtataatcaaGCAACACTAACGTTATGGAATTGGaggattgtttgttttttcctacttcACTGCCACCTTGTCAGCACCGTCTTTTGTACGATGTAGGAAAGGCAAAGATCAAGCTTATTGTTGTAAATATAGTGCTCTATCTAGTTATCTAACATTCTGTCGCCATAATCTCTTCAGGTAAATACAAATGATTTTGTTATACTTAGTTATTTATGAAAACTTATGAGAGTTTAAGCACCAAGGGGCCTTTTCTTTTCTACTTTGATTTCTCTCTGTGTAACCACTGCAGAAGACCATGTCATGGCACATAAACTGTAATATTCAGCGCTGTTTCTTTTGTGCAGCGGCGTATGGCTTTCAGACTGAAACCTGCCATGTTTGAATCCTTGTTTCATTTTTGCTTGCAACTGTGGCGGTTCACATTTCTTTCATCGTAGAAATGTTTCATTAAGCTTGTGTAATTccatattttcagtctcatttccATAGCCAAAATGCAGCAATAACAATAGTGCTTAGGAATatttagcattgttttacacTGCAAAATACGCTTTTTATTAGTGGGAttacggatcacaaatctcacggttagGATCACTTTACAGTTTTTGAGTCACAACAGTGTACAAGAGTGTACAACAAATAACCCCCTCAAAAACTGGTTATTGTAGTTATTGACTACAAACTAACAATGGTTTGGCTACACTaagcatacagttgaaaccagaagtttacatacactgtataaaaaggcacatgaccatttaaaaaaaaagtcagatgttaaagtaactaaactttttcttttttaggtaGGTT
>TCONS_00073910
ATGTGGTTGTCTTTGTCAGATTGCTCAGTCTTATTATCTGTTCATCTGCTTTTAAATGTATCAGGTTTTCAAGGAGAGCCAGGAGCTCCTGGTCCCCCAGGCAGATATATCGAGGGTCCTCCTGGACCACCTGGCTTCCCTGGAGAGATTGGCAAGAAAGGAGAAAAAGGAGCCGATGGACGGTCTTTTCCAGGTCCCAAAGGAACTGATGGGCAACCTGGCCCACCCGGACCGCCAGGACCTATTAATGAAGAATGTGATGTTACAAAAGGAGCTCCAGGCCCTCCGGGACCTCCAGGGTTGCAAGGAGAGGTGGGACAGAAAGGTGATCAAGGTGAAACATGCACAGAGTGCAATGCTTTTGGTCCCCCTGGTTTGCCTGGTCCTCAAGGGCCAAAGGGTCTGCAAGgtttTCCTGGACCAGCAGGTATTAAAGGCGAGAAGGGTTTGCCAGGGCCCAGTGGGCCAGCTGGAAATGCTGGTTTTAATGGTGCTCCAGGTTTGATGGGTAAACCTGGTGCTCAAGGTGAACCTGGTGATATATTTGTGGCTCCTGGGCTGAAGGGAGATAAGGGCTTACCTGGTACTACTGGAGACAGAGGATTCCCGGGTGTTGATGGGCTCCCAGGAAAAGATGGACGACCAGGATATCCTGGAACCAAGGGAGAGCCTGCTAAATTCGGAATTAAGGGTGATCGTGGCCCAGATGGAGATTTTGGAGTTCCTGGCCCTCCAGGCGAAAGAGGTCCCCCAGGTGAACCAGGTATAGGTCGGCCAGGTCAACCTGGAGATAAGGGCTCTGCAGGATTCCCTGGTGCACCAGGAAGGCCAGGACTACAAGGAGCTAAAGGTGAAGCTGGTAAAGTCATAAGTTTACCTGGGCCTCAGGGTGCCCCAGGGCCTCGTGGAGAGAGTGGTAGACCTGGTCTTCAAGGTGATAGAGGATTTCCAGGTGAACGTGGGGTTCCAGGATTCCCTGGAGATAAAGGTGACCCTGGACTGCCAGGAATTGGACTTCCAGGACCCCCGGGGCCAAAAGGGTACTCTGGTATTCCAGGACCAAGTGGAATCCCAGGAGAGTCTGGCGAACCAGGTCAGGATGGCTTACCTGGTCGCGCAGGAACACCTGGTCAAAAAGGTGAACCTGGCAGGGGTCTTCCTGGTCCTAAGGGTACTACAGGTCTACCAGGAGTGCCAGGATTTCCAGGGGAAAAGGGTAATACTGGAATGCCAGGGGTTCCTGGAACAGAAGGACGTACTGGGCCACCTGGACCTCAAGGACTTAAAGGTAACCCTGGACCACCTGGAGTCCATGGTGCACTAGGGCCACCAGGTCCTCCAGGACTGGGAGAACCTGGAGCTCCTGGACCAATGGGGCCACCTGGAGGCCCTGGACCTATTGGCCAGTCTGGAATAAAGGGTGACAAGGGTTATCAAGGACTACCTggtttggacatgcctggccCTCCAGGAGACAGAGGTAGCCCTGGTGTCCCAGGTCTACCAGGATCAAAGGGTTTGCCTGGGCAACCAGGAGTTCCTGGAAAAGATGGCTTTCCTGGCGAACGTGgTCCAAAAGGAGAAATTGGAATCATGGGAATGGCAGGACCACCAGGATTTCAAGGTTTAGTTGGAAATCCTGGAGATCCTGGGCAAAAGGGTGACCCAGGTATGCCTGGCATCAGAGGAGACTTTGGTGATTTAGGCACCAAGGGTGAGAGAGGAGAGCCGGGTCTACAGGGGCCACCTGGAAATATGAGTGATGTGGACATGGAACACATGAAAGGGGATAAAGGAGACATAGGAGACAGAGGTGATCCTGGTCCTACTGGAGAAAAGGGGTTTCCTGGAACATCTGGTGACCCTGGTATGCCAGGAAAAGATGGAATGCCAGGGTCACCTGGACAGCCAGGTGATAAAGGAGACCCTGGAATCATTGGAAAACCAGGAAGCATTGGAGAACCTGGAGACACAGGCGCTAGAGGAGACATGGGATACCCAGgttCAATGGGTCCAAAGGGTGCTAAAGGTGTTGGTGGTTCACCGGGTCACCCTGGTTTTAAGGGGACTGATGGCTCCAAAGGAGATAAAGGAGATCCTGGTGAACCAGGAATAGGAATCCCTGGTCCCCCTGGCACAAAGGGAAATATAGGCTCCCCTGGATTCCCTGGTGAGCCTGGAGAGAAGGGACAGAAGGGTACAATGGGTATGACAGGAACTCCTGGAACTCAAGGACATAAAGGAGACCAAGGATCGATTGGTTACCCAGGCAGTCCAGGGAAGCCTGGTGAGAAAGGTGTTGGTGGGTTGCCAGGGTCCCCAGGAGAACCTGGGACTCCAGGACGTCCAGGTGAGCCTGGTCTACAGGGTCCTCCAGGTCCCCATGGGGAAAAAGGTCAATCAGGGCAAGATGGCATTCCTGGATTCACTGGAGAGAGAGGGGAGCCTGGTGTACCAGGGAGAGGTTTGCCCGGATCTCGTGGAGAACCTGGCGGCAAAGGTGACAAAGGCAACCCTGGTCTTCCTGGCATTCCCGGGAGTCCAGGTATACCTGGAACCAAAGGTGATAAAGGTCTGTCAGGATTGCCAGGGGATCAAGGTCGACCTGGGGAGAGAGGACTTCCAGGACAAGCCATGGAGGGGCCTAAAGGGGACAGAGGAGACCAGGGACAGCCAGGAGAAAGAGGTGCAACTGGTGAACAAGGTCCACCTGGAATTCCAGGAAGTGCTGGATCAAAAGGAGAAAAGGGAGATGTGGGCTTCCAAGGCGCACCAGGCTCTCGGGGTTATAAAGGAGACAAAGGCTtcattggcgtttctGGTGAGCCTGGGTTGCCTGGTTATAATGGACCAAAGGGTGAGATGGGACCCCAGGGTGTTCCTGGTTTCCCTGGTACAAAGGGTGAACAAGGAGTGATTGGTTCTAAGGGTGAAGGAGGTGACAGAGGATTCCCAGGTCTTAAAGGTAGTGAAGGTCCCCCTGGACCCCCTGGACCACACACATATGTAAAGGGAGATCCAGGTCCTCCAGGACCACAGGGTCCCCAAGGTCTAGTTGGAATTCAAGGCTTCCCTGGGGCAAAAGGACAACAGGGTGTGATGGGACTCCAGGGTTTAAAAGGAAGCGATGGGACACCTGGCTATAATGGACATCCTGGGGCCAAAGGAGAGCCTGGACAAACTGGACCCCCCGGGCCTAGAGGGTACCCCGGACCCCCAGGGCCTGATGGTATTCCAGGTCATATCGGCCCTCCAGGCCCTTCCTCAATGGACCACGGCTTCCTTGTAACTCGCCACAGTCAGACTATTGATGTACCACATTGTCCACAGGGAACGACGCCAATCTATGATGGATATTCCCTGCTTTATGTCCAGGGCAATGAAAGGTCACATGGGCAAGATCTAGGTACAGCTGGTAGTTGCCTAAGGAAGTTCAGCCCAATGCCGTTCCTCTTCTGTAACATCAACAATGTTTGCAACTTTGCATCTCGTAATGACTATTCCTACTGGCTGACCACTCCAGAGCCCATGCCTATGAGCATGGCCCCCGTCACCGGCGAGAGCATCAAACCCTTCATCAGCAGATGTGCTGTGTGTGAGGCTCCTGCTATGGTTATAGCTGTGCACAGTCAGACCATACAAATTCCAAACTGTCCCGATGGCTGGGCTTCACTCTGGATTGGATACTCTTTCGTTATGCATACGAGCGCTGGTGCTGAGGGCTCCGGTCAGGCTTTGGCTTCTCCTGGCTCTTGTCTTGAAGAGTTCCGCTCGGCTCCCTTCATCGAGTGTCATGGTCGCGGCACCTGCAACTACTACGCCAATTCTTACAGCTTCTGGTTAGCCACCATAGAAGACACAGATATGTTTACGAAACCAGTCCCTGCAACATTAAAGGCCGGAAGTCTAAGAACTCACATCAGCAGGTGTCAAGTGTGCATGAAGAGGGTATAA

Function

symbol description
col4a1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-114 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

Ensembl:

ensembl_id ENSDARG00000055009

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073909 False 5961 mRNA 0.50 50 8634229 8670158
TCONS_00073910 True 3954 mRNA 0.54 33 8635438 8661436

Neighbor

gene id symbol gene type direction distance location
XLOC_037640 irs2b coding downstream 180169 8429239 ~ 8454060 (-)
XLOC_037639 si:ch211-145c1.1 coding downstream 320201 8288268 ~ 8314028 (-)
XLOC_037638 NA coding downstream 348021 8284155 ~ 8286208 (-)
XLOC_037637 NA coding downstream 470234 8160341 ~ 8163995 (-)
XLOC_037636 NA coding downstream 691632 7941769 ~ 7942597 (-)
XLOC_037642 rab20 coding upstream 217370 8887528 ~ 8895243 (-)
XLOC_037643 ing1 coding upstream 302922 8973080 ~ 8979468 (-)
XLOC_037644 BX537313.1 coding upstream 338965 9009123 ~ 9024269 (-)
XLOC_037645 NA coding upstream 356225 9026383 ~ 9050515 (-)
XLOC_037646 cbsb coding upstream 510462 9180620 ~ 9228941 (-)
XLOC_037631 NA non-coding downstream 1128698 7499260 ~ 7505531 (-)
XLOC_037626 BX942813.1 non-coding downstream 1274745 7357819 ~ 7359484 (-)
XLOC_037649 NA non-coding upstream 616261 9286419 ~ 9289070 (-)
XLOC_037651 AL954142.4 non-coding upstream 685214 9355372 ~ 9370866 (-)
XLOC_037663 NA non-coding upstream 1698222 10368380 ~ 10370625 (-)

Expression


Co-expression Network