G1842145


Basic Information

Item Value
gene id G1842145
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21648246 ~ 21651632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2109247
TTTCCCCTACATACCTCTGGTTTGCTCTTTCAGACCCACAAAGGCAACAAGAAAGAAGTTGCTACATTAACTGTttctctgggatttgaactaggGGGTACATACCTCAAGTTAGCTCTTTCATGACAACAAAAGGCAACATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGGCTTTTGCAGACAAGGATAATATATTGTTACTCCACGACATAGTATGTTATCACAACTCTATTAAAAGGACATTCTGTACAAGGTGTCACTTCAGTCTTTCTATTTGATGGGAACTACCCCTACCCCCCAACAAACCTCAAGTTAGTTCTTTCATGCCAACAAAAGGCAGAATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGCCATCTGCACACAAGGTTAGTAATTTCTCCAAATTAAAGTTTGTTACTCCATGACATAATATCACAATACTATTGAAATTACTTTCTTTACAATGTGACTGGAGTGTTGGACTATTTTTtggcccttcctctgacactgcctagtatatacagtaggtcctcGACGGTAGGAAGCTTCTACCCAGTGATGTACTCGCCCGTCAGCAATCAAATTTTATTCATAAATCCCTTACAACATCAGCCGATgttgaaacccagcctaaaaccccaaaacagcaagcaatgcagatgcagtggctaggaaaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctatgaggcgtggccagtcctcttctggctgtgccggttggagatAACAGTACGTGGCCAAACGTTCATATCACCAGCAGgctcaaataataatcacagtggttgtagagtgcaacaggtcagcacctcaagagtaaatgtcaggtccgggacaaggtagcacgtccggtgaataCGTCatggttccatagctgcaggcagaacagttcaaactggagcagcagcacgatcaGGTGGACTGGGGCCAGCAAAGAGTGATCATgccagatagtcctgaggcatggtcccagggctcaggtcctccgggatagaagggagagggagagagtgaattacagggagcatacttaaattcacacgggacaccagataagacaggataaatactccaggtTTAACTGactgaccctaacccccct
>TU2109248
TTTCCCCTACATACCTCTGGTTTGCTCTTTCAGACCCACAAAGGCAACAAGAAAGAAGTTGCTACATTAACTGTttctctgggatttgaactaggGGGTACATACCTCAAGTTAGCTCTTTCATGACAACAAAAGGCAACATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAAGTCTGGTTTGGGAAGCAAACGCCATAACCACTACTctaccagagagacagacactcgATGTTAAGGGGTACTTCAAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGGCTTTTGCAGACAAGGATAATATATTGTTACTCCACGACATAGTATGTTATCACAACTCTATTAAAAGGACATTCTGTACAAGGTGTCACTTCAGTCTTTCTATTTGATGGGAACTACCCCTACCCCCCAACAAACCTCAAGTTAGTTCTTTCATGCCAACAAAAGGCAGAATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGGCTTTTGCAGACAAGGATAATATATTGTTACTCCACGACATAGTATGTTATCACAACTCTATTAAAAGGACATTCTGTACAAGGTGTCACTTCAGTCTTTCTATTTGATGGGAACTACCCCTACCCCCCAACAAACCTCAAGTTAGTTCTTTCATGCCAACAAAAGGCAGAATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGCCATCTGCACACAAGGTTAGTAATTTCTCCAAATTAAAGTTTGTTACTCCATGACATAATATCACAATACTATTGAAATTACTTTCTTTACAATGTGACTGGAGTGTTGGACTATTTTTtggcccttcctctgacactgcctagtatatacagtaggtcctcGACGGTAGGAAGCTTCTACCCAGTGATGTACTCGCCCGTCAGCAATCAAATTTTATTCATAAATCCCTTACAACATCAGCCGATgttgaaacccagcctaaaaccccaaaacagcaagcaatgcagatgcagtggctaggaaaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctatgaggcgtggccagtcctcttctggctgtgccggttggagatAACAGTACGTGGCCAAACGTTCATATCACCAGCAGgctcaaataataatcacagtggttgtagagtgcaacaggtcagcacctcaagagtaaatgtcaggtccgggacaaggtagcacgtccggtgaataCGTCatggttccatagctgcaggcagaacagttcaaactggagcagcagcacgatcaGGTGGACTGGGGCCAGCAAAGAGTGATCATgccagatagtcctgaggcatggtcccagggctcaggtcctccgggatagaagggagagggagagagtgaattacagggagcatacttaaattcacacgggacaccagataagacaggataaatactccaggtTTAACTGactgaccctaacccccct
>TU2109249
TTTCCCCTACATACCTCTGGTTTGCTCTTTCAGACCCACAAAGGCAACAAGAAAGAAGTTGCTACATTAACTGTttctctgggatttgaactaggGGGTACATACCTCAAGTTAGCTCTTTCATGACAACAAAAGGCAACATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGGCTTTTGCAGACAAGGATAATATATTGTTACTCCACGACATAGTATGTTATCACAACTCTATTAAAAGGACATTCTGTACAAGGTGTCACTTCAGTCTTTCTATTTGATGGGAACTACCCCTACCCCCCAACAAACCTCAAGTTAGTTCTTTCATGCCAACAAAAGGCAGAATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGCCATCTGCACACAAGGTTAGTAATTTCTCCAAATTAAAGTTTGTTACTCCATGACATAATATCACAATACTATTGAAATTACTTTCTTTACAATGTGACTGGAGTGTTGGACTATTTTTtggcccttcctctgacactgcctagtatatacagtaggtcctcGACGGTAGGAAGCTTCTACCCAGTGATGTACTCGCCCGTCAGCAATCAAATTTTATTCATAAATCCCTTACAACATCAGCCGATgttgaaacccagcctaaaaccccaaaacagcaagcaatgcagatgcagtggctaggaaaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctatgaggcgtggccagtcctcttctggctgtgccggttggagatAACAGTACGTGGCCAAACGTTCATATCACCAGCAGgctcaaataataatcacagtggttgtagagtgcaacaggtcagcacctcaagagtaaatgtcaggtccgggacaaggtagcacgtccggtgaataCGTCatggttccatagctgcaggcagaacagttcaaactggagcagcagcacgatcaGGTGGACTGGGGCCAGCAAAGAGTGATCATgccagatagtcctgaggcatggtcccagggctcaggtcctccgggatagaagggagagggagagagtgaattacagggagcatacttaaattcacacgggacaccagataagacaggataaatactccaggtTTAACTGactgaccctaacccccct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2109247 False 2065 lncRNA 0.43 3 21648246 21651632
TU2109248 False 2726 lncRNA 0.43 2 21648246 21651632
TU2109249 True 2065 lncRNA 0.43 3 21648246 21651632

Neighbor

gene id symbol gene type direction distance location
LOC110502450 LOC106607022 coding downstream 43928 21560000 ~ 21604318 (-)
LOC110502449 LOC106607006 coding downstream 119591 21523734 ~ 21528655 (-)
LOC110502447 LOC106606998 coding downstream 131371 21512971 ~ 21516875 (-)
LOC110502445 NA coding downstream 343815 21298594 ~ 21304431 (-)
LOC110502444 LOC106606853 coding downstream 362315 21144640 ~ 21285931 (-)
LOC118943877 LOC106607043 coding upstream 8826 21660458 ~ 21663289 (-)
LOC110502452 LOC106607058 coding upstream 26568 21678200 ~ 21822311 (-)
LOC110502455 LOC106607083 coding upstream 1164625 22816257 ~ 22870825 (-)
LOC110503091 LOC106607091 coding upstream 1228155 22879787 ~ 22950292 (-)
LOC110502457 LOC106605630 coding upstream 1347607 22999239 ~ 23006480 (-)
G1841929 NA non-coding downstream 46314 21301999 ~ 21601932 (-)
G1842039 NA non-coding downstream 186087 21460956 ~ 21462159 (-)
G1842008 NA non-coding downstream 220359 21427462 ~ 21427887 (-)
G1841964 NA non-coding downstream 265985 21354681 ~ 21382261 (-)
G1841909 NA non-coding downstream 319960 21260825 ~ 21328286 (-)
G1842169 NA non-coding upstream 34449 21686081 ~ 21686343 (-)
G1842170 NA non-coding upstream 37664 21689296 ~ 21689536 (-)
G1842257 NA non-coding upstream 162018 21813650 ~ 21816666 (-)
G1842419 NA non-coding upstream 378825 22030457 ~ 22030728 (-)
G1842441 NA non-coding upstream 399390 22051022 ~ 22051511 (-)
G1841959 NA other downstream 276447 21345514 ~ 21371799 (-)
G1841694 NA other downstream 704631 20943307 ~ 20943615 (-)
LOC110502408 LOC106606370 other downstream 2263204 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 2526903 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 2794074 18849389 ~ 18854222 (-)
G1843946 NA other upstream 1531355 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 1563853 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 1693459 23344353 ~ 23358461 (-)
G1846858 NA other upstream 3788175 25439807 ~ 25440387 (-)
G1850441 NA other upstream 6423293 28074925 ~ 28078251 (-)

Expression


Co-expression Network