XLOC_037643 (ing1)


Basic Information

Item Value
gene id XLOC_037643
gene name ing1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 8973080 ~ 8979468 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073913
tgaggtAGGTCTCCGCCATAGAATCGTCACTGGTCCTGAACAACTCAATACTACTACTAACACCTTAGTAACTTTTCTCAGcagcctttattttttttaaaacaaaggcCATAGCATAGGATAattattaaaattgatttatCACAGATTTATCAACATCCTAAATGCGTTTGAAAAGATGCTGAATCCTTCATCAAACGGCGAGTCGTCTCATGTTGTGGTGAACTATGTTGAGGAGTACCTGGAGCTGGTTGAGTCTTTGCCTTTGGACCTACAAAGATGTGTGTCTCTTATGAAGGAAATAGACGCCAAATATCAAGAGATCCTCAACGAATTGGATGAAGCTTATGAAAAGCACAGACAAGAATCCGATCCGGTCCAGAGACGTCGTCTGCTCCACTGCATCCAGCGCTCGTTGATCCGCACAGAAGAACTcggagatgaaaagatccagatCGCAGGCCAAATGGTGGAAATGGTGGAGAACCGCAGCCGACAGCTGGAGTGGCACGGCGAGCTTTTCCAGGCCAGTCATGACTCTCCGGAGAGCAGCGTGTCAGTGGGCAGCACCCCGAGCGCCATAACAACCACAGCCATGACGACGATTTCTGATATACTGCTCTCGGCCAGTAAACTAACTGCAAATCGGAGACGAGAGGAGACCCCGAGTTCAGTTGACAAATCTGGTGGAAAGCGTTCGAGAAGGCAGAAAAATGGCTCAGAGAATCGGGAGAACTCTAATTACAGCTTGGAGCACATCGAGGATGTTTCATCAGGCACGCCAAAAGAAAAGAAGCCTAAGGCATCAGCAACATCATCCAAAAAGAAGAAGAGGTCCAAGAGCAAGCAAGACCGAGAGCCGTCGCCAACTGACCTGCCCATTGATCCCAATGAACCCACCTACTGCCTTTGTGAGCAGGTGTCCTACGGAGAGATGATCGGTTGCGATAATGACGAATGCACTATTGAATGGTTTCACTTCTCATGTGTTGATCTGCACCATAAGCCCAAAGGGAAATGGTACTGTCCCAAGTGCAGAGGAGACAACGAGAAGACCATGGACAAGGCATTGGAGAGGTCTAAAAAGGAGAGGGCGTACAACAGGTAGTGTCAGGCGAACTTTCTGACATTCGAGAGTTAAGCGATCAGTTTTGAGAAGTCTGTGATGATGTACCAGGTCAATGGTTAGTATATCTTTTAGGGATATATTTCTGAGAGGATTCGCTCATCAGTTGTGTAGTTATCAATGTTCTACAGCGTTAGGAGTATCCAGTTCATCCAACAGGACAACAGTGCATTTTTATGTTCAGCTACTTGTATTTATGTCTTGCGTAACTGTACATATGTTCATGTGAAATAAGCCACACAGGTCGCAGTATTGTTGCATGGCTTTTGTTCTTTTAAAACACAAGGCCTTACAATATTGATAACGTTATGAgaaggttccattagttaatgtatttgcaacagtatttattcattttttttttaatattagttaaGAATTACAAAGTTCATCGgctaaaatgtttaatttgttagcattagttaagattaaagggatagttcatcaaaaatgtatatttactcaTGAATATGCGCTCAAATGGTTCTGAACCTTTTTCTATTGTACTCAAGaggatattgtgaagaatgttggaaaataaCAGCCATTGACTCTCATAGtaggaataaaaaaaattgatgtcAAATGGTTTTTATTCtccaacattttttattgtgtttaacagaagaaagaaaaatcaAACCAGTTTGGATTAAATGATGGATGAGTAAATAGCAGAAGTTTAATTTGTTGGACAAACTAATCC
>TCONS_00073914
CTTGGGGTTGTGCGTAGTCAACAGTCATTTTTCCTCTGTATTTTTCTATTCCACAATCCAAACTCCACTAAACCCATCTAATCCTAAAATAACATGCAGAGCATTTTAATTTCTATCCTTCGAAATGACCGTTGAAGTCTTGCTGACAGACGCCACCACGCGTCGTGCCACTACACTCGGTTGGAAGGTTACACATCAACGTCAGCGTAAAgatattaatattcatgagATTTATCAACATCCTAAATGCGTTTGAAAAGATGCTGAATCCTTCATCAAACGGCGAGTCGTCTCATGTTGTGGTGAACTATGTTGAGGAGTACCTGGAGCTGGTTGAGTCTTTGCCTTTGGACCTACAAAGATGTGTGTCTCTTATGAAGGAAATAGACGCCAAATATCAAGAGATCCTCAACGAATTGGATGAAGCTTATGAAAAGCACAGACAAGAATCCGATCCGGTCCAGAGACGTCGTCTGCTCCACTGCATCCAGCGCTCGTTGATCCGCACAGAAGAACTcggagatgaaaagatccagatCGCAGGCCAAATGGTGGAAATGGTGGAGAACCGCAGCCGACAGCTGGAGTGGCACGGCGAGCTTTTCCAGGCCAGTCATGACTCTCCGGAGAGCAGCGTGTCAGTGGGCAGCACCCCGAGCGCCATAACAACCACAGCCATGACGACGATTTCTGATATACTGCTCTCGGCCAGTAAACT

Function

symbol description
ing1 Predicted to enable methylated histone binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization; negative regulation of cell population proliferation; and regulation of cell death. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in head and neck squamous cell carcinoma and squamous cell carcinoma. Orthologous to human ING1 (inhibitor of growth family member 1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0010941 regulation of cell death biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0035064 methylated histone binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060421-4388 Predicted to enable methylated histone binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization; negative regulation of cell population proliferation; and regulation of cell death. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in head and neck squamous cell carcinoma and squamous cell carcinoma. Orthologous to human ING1 (inhibitor of growth family member 1).

Ensembl:

ensembl_id ENSDARG00000019116

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073913 False 1832 mRNA 0.41 2 8973080 8979154
TCONS_00073914 True 718 mRNA 0.47 4 8974276 8979468

Neighbor

gene id symbol gene type direction distance location
XLOC_037642 rab20 coding downstream 77837 8887528 ~ 8895243 (-)
XLOC_037641 col4a1 coding downstream 302922 8634229 ~ 8670158 (-)
XLOC_037640 irs2b coding downstream 519020 8429239 ~ 8454060 (-)
XLOC_037639 si:ch211-145c1.1 coding downstream 659052 8288268 ~ 8314028 (-)
XLOC_037638 NA coding downstream 686872 8284155 ~ 8286208 (-)
XLOC_037644 BX537313.1 coding upstream 29655 9009123 ~ 9024269 (-)
XLOC_037645 NA coding upstream 46915 9026383 ~ 9050515 (-)
XLOC_037646 cbsb coding upstream 201152 9180620 ~ 9228941 (-)
XLOC_037647 u2af1 coding upstream 250978 9230446 ~ 9242777 (-)
XLOC_037648 si:ch211-214p13.3 coding upstream 271998 9251466 ~ 9282519 (-)
XLOC_037637 NA non-coding downstream 809085 8160341 ~ 8163995 (-)
XLOC_037636 NA non-coding downstream 1030483 7941769 ~ 7942597 (-)
XLOC_037631 NA non-coding downstream 1467549 7499260 ~ 7505531 (-)
XLOC_037626 BX942813.1 non-coding downstream 1613596 7357819 ~ 7359484 (-)
XLOC_037649 NA non-coding upstream 306951 9286419 ~ 9289070 (-)
XLOC_037651 AL954142.4 non-coding upstream 375904 9355372 ~ 9370866 (-)
XLOC_037663 NA non-coding upstream 1388912 10368380 ~ 10370625 (-)

Expression


Co-expression Network