XLOC_037647 (u2af1)


Basic Information

Item Value
gene id XLOC_037647
gene name u2af1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9230446 ~ 9242777 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073920
GGCAGTAGTTTGACCCTCCATCTTCAGCGGCCCCTGCTCTTGATCCTCcggcagaagaaaaaaaacccaCCGCCTTTCTTCTTTCAAAATGGCCGAATACTTGGCGTCTATTTTCGGTACAGAAAAAGACAAGGTCAACTGCTCTTTCTACTTTAAAATTGGAGCCTGTCGCCATGGAGACCGATGCTCTAGACTTCATAATAAACCCACCTTCAGTCAGACCATTGCCCTGTTGAACATCTACAGGAACCCACAAAACACAGCCCAGTCTGCTGATGGCTTAAATGCTGTCAGTGATGTGGAGATGCAGGAACATTATGATGAGTTCTTTGAGGAGGTCTTCACTGAAATGGAGGAGAAATATGGAGAGGTTGAGGAGATGAACGTCTGCGATAATTTAGGAGATCACTTGGTGGGAAATGTCTATGTGAAGttcCGCCGTGAAGAAGATGCAGAGAAAGCGGTGATTAACCTGAACAACCGCTGGTTTAATGGGCAGCCCATTCATGCGGAGCTCTCACCTGTCACTGACTTCAGAGAGGCCTGTTGTCGACAGTATGAGATGGGAGAGTGCACTCGAGGAGGCTTCTGCAATTTCATGCATCTGAAGCCAATCTCAAGGGAACTAAGGAGAGAGCTGTACGGCCGCAGAAGGAAGAGACATCGGTCCCGCTCTCGCTCCCGTGAACGACGCTCTCGCTCTAGGGAACGCAATAGAGGAGgtggtggtggaggaggaggCGGTGGTGGTGGCGGCGGCGGCGGTGgtggtggtggaggaggaggaagagaccGAGAGAGACGGCGGTCAAGAGATAGAGAGCGTTCTGGAAGATTTTAAAATTTCCTTCTTTCTTGAAATCAACATTCAGTCACCAGACCCTTCAGCTCTCTCCTGATGAAATGTGATAACTGTTGAAATTGTTTCCTTCTTAATTGTCCTCTGATCTTTTTATTCAACGTTTGTTTGcttttcaataaaaaaacacCTTAGTCGTTTCACA

Function

symbol description
u2af1 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to human U2AF1 (U2 small nuclear RNA auxiliary factor 1).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0089701 U2AF complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030628 pre-mRNA 3'-splice site binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko05131 Shigellosis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-020419-1 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to human U2AF1 (U2 small nuclear RNA auxiliary factor 1).

Ensembl:

ensembl_id ENSDARG00000015325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073920 True 1004 mRNA 0.48 8 9230446 9242777

Neighbor

gene id symbol gene type direction distance location
XLOC_037646 cbsb coding downstream 1505 9180620 ~ 9228941 (-)
XLOC_037645 NA coding downstream 179931 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 coding downstream 206177 9009123 ~ 9024269 (-)
XLOC_037643 ing1 coding downstream 250978 8973080 ~ 8979468 (-)
XLOC_037642 rab20 coding downstream 335203 8887528 ~ 8895243 (-)
XLOC_037648 si:ch211-214p13.3 coding upstream 8689 9251466 ~ 9282519 (-)
XLOC_037649 NA coding upstream 43642 9286419 ~ 9289070 (-)
XLOC_037650 zgc:113337 coding upstream 79647 9322424 ~ 9348058 (-)
XLOC_037651 AL954142.4 coding upstream 112595 9355372 ~ 9370866 (-)
XLOC_037652 si:ch211-214p13.9 coding upstream 168232 9411009 ~ 9415000 (-)
XLOC_037638 NA non-coding downstream 944238 8284155 ~ 8286208 (-)
XLOC_037637 NA non-coding downstream 1066451 8160341 ~ 8163995 (-)
XLOC_037636 NA non-coding downstream 1287849 7941769 ~ 7942597 (-)
XLOC_037663 NA non-coding upstream 1125603 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1603141 10845918 ~ 10846549 (-)
XLOC_037671 NA non-coding upstream 2328535 11571312 ~ 11572354 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_04011298_04017585 U2AF1, U2AF1.S coding CI01000037 null 4011152 ~ 4017684 (-)
bowfin (Amia calva) AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding CM030128.1 CM030128.1 29383488 ~ 29398221 (+)