XLOC_037648 (si:ch211-214p13.3)


Basic Information

Item Value
gene id XLOC_037648
gene name si:ch211-214p13.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9251466 ~ 9282519 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073921
TAAGATCGCTGCCTTCTCCacacaagtggtgctcgctgcacaTACCTCTGCTCTGCtgcttgtttgtgtgtctgtcgaTTTTTACCCACGGCCACTTGCGTCTCCACCTGCACCACTTGGGTCTGAGAGCAGTCCTTCATAGAAAGCAATCGTCGGAAACTGAACGGGAAACTGAACGGTTCAATCAGCGGCATATTGTGAGCGCGGATGAGGTGTCTGTAATCATGCTTGTCTCCAGTCACTTCATGATCACTATTACTGTCATATCGTATTTTTATAGGAGCGGGGCAGAAGACACGAGGCCACTGAGTTGGAGGGTGGATGTGGATTCGATTGCTGTCGCCGGATGCCAAGAGGTTACACTAGCTACATGCACAGTGATCAGTGAGAAGACGGCTGCTCGGGTGTCATGGCGTTTGGGATCTTTGTCTGATTCTTTGAAACCATCATCCAATAATGTGCAACATCTGGATGGGATTTTCACGGTCTCAAGCAGTCTGATTGCTGTGCCAACTGTTCAGATGAATCAACAGCTTGTCCAGTGTGTGATCACGCATGATACACGGAAAGCCGAGATAGAAATCGATCACAGGATCAAAGTACACTatccACCTCAGCTGGTCACTGTGACGCCTTTCAATGATCCCTCTTATGCTGAAGTGTTTCAGTGTGAGGCAGATGCTAATCCTCCAGCAACAGACTTCACATGGCACAGCAAGCACGTGACTATCCCAAATGATGCCATTGAAATCAAAGGAAATAAACTCTACTTCTTGAAACTGTCCTCTGACCTCAATGGAGTGTATTTCTGTAATGCTTCAAACATGTACGGCGCAGGAGTCGGCTCTCTCTTCTGGCATCAAGAAAAAAGACTGAAGACTACCATTCTGAGCTTTGAGTCATTTGATCAATTCAAGGCAAATTATGAAGGAGCCATGGGATACGTGTCAATATTTTCATCACTTCACCTGCAGCCTTTCTCATGCCAGTAAccgggctggagtgggactcattttcagcatTGGAGTTTTTTGTACTAACaacttcttttttaaattttgag

Function

symbol description
si:ch211-214p13.3 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-779 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

Ensembl:

ensembl_id ENSDARG00000087403

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073921 True 1063 mRNA 0.46 5 9251466 9282519

Neighbor

gene id symbol gene type direction distance location
XLOC_037647 u2af1 coding downstream 8689 9230446 ~ 9242777 (-)
XLOC_037646 cbsb coding downstream 22525 9180620 ~ 9228941 (-)
XLOC_037645 NA coding downstream 200951 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 coding downstream 227197 9009123 ~ 9024269 (-)
XLOC_037643 ing1 coding downstream 271998 8973080 ~ 8979468 (-)
XLOC_037649 NA coding upstream 3900 9286419 ~ 9289070 (-)
XLOC_037650 zgc:113337 coding upstream 39905 9322424 ~ 9348058 (-)
XLOC_037651 AL954142.4 coding upstream 72853 9355372 ~ 9370866 (-)
XLOC_037652 si:ch211-214p13.9 coding upstream 128490 9411009 ~ 9415000 (-)
XLOC_037653 si:ch211-214p13.9 coding upstream 133141 9415660 ~ 9419704 (-)
XLOC_037638 NA non-coding downstream 965258 8284155 ~ 8286208 (-)
XLOC_037637 NA non-coding downstream 1087471 8160341 ~ 8163995 (-)
XLOC_037636 NA non-coding downstream 1308869 7941769 ~ 7942597 (-)
XLOC_037663 NA non-coding upstream 1085861 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1563399 10845918 ~ 10846549 (-)
XLOC_037671 NA non-coding upstream 2288793 11571312 ~ 11572354 (-)

Expression


Co-expression Network