XLOC_037649


Basic Information

Item Value
gene id XLOC_037649
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9286419 ~ 9289070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073924
ACGACACCGTTGCTCATACCTGTACTGGACCAGTTTTGGAGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCCAGGAGATATAGCTGGGGAAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGATCCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAGAGCTGATCTCTGACTACTATGTAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATCTGCAGATATATGTCTGCCGTGTACCAGATGTAGTGGACATCATCATTGAGGGCATCCCTGTGCTGTCTTGGAAACCAGGCCAGGGCTCTGAACCTCCAGTATCCACCACAACTCAGCAAAACATTTAAGGTGTTTCAAAGACTTTTTGTGGGACTTGACACTGCGACTTGACACTGCGTCCAAAGTCTTCCTCCCGATTCATGACACAAAAACTTCTGAGTTAGTAAATTAGTTGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTTACTTGGAACAATGTGGTAGTTACGCACAGACTTCTTCAGTTCCTGGATAAGTCTGCAGCAAATATGggcattttgatttgcttttgtatatatgggcaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttattttaatgttgtagTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00073923
ACGCAGCACGCATCCAGAGCAACGACACCGTTGCTCATACCTGTACTGGACCAGTTTTGGAGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCCAGGAGATATAGCTGGGGAAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCAGTTTTTATGTCCCAGCTGGACAAATACACTCAAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTCAACGCATCAATTGGAGTTATTGGAACTGAAACAGGATCCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAGAGCTGATCTCTGACTACTATGTAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATCTGCAGATATATGTCTGCCGTGTACCAGATGTAGTGGACATCATCATTGAGGGCATCCCTGTGCTGTCTTGGAAACCAGGCCAGGGCTCTGAACCTCCAGTATCCACCACAACTCAGCAAAACATTTAAGGTGTTTCAAAGACTTTTTGTGGGACTTGACACTGCGACTTGACACTGCGTCCAAAGTCTTCCTCCCGATTCATGACACAAAAACTTCTGAGTTAGTAAATTAGTTGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTTACTTGGAACAATGTGGTAGTTACGCACAGACTTCTTCAGTTCCTGGATAAGTCTGCAGCAAATATGggcattttgatttgcttttgtatatatgggcaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttattttaatgttgtagTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00073922
CGCCCACATGACGCAGCACGCATCCAGAGCAACGACACCGTTGCTCATACCTGTACTGGACCAGTTTTGGAGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATGTAAGTAACTATTTACATTGCATAAAGTTTGGTTTTAGCCGAATGAGCACGCatttattgcactgtaaaatgaAAACAAGTCACCCTTCATGACAGTTTTGCAAGCGCCATGCGGCCTTACCGAAAGTATGGAAGTTAGCATTAATCTCAAAACAACTATCGCAAACGTATTATCGAAATATGTTAGATTCATTGCCAGATTATGTTTATACTTTGTTTTGTgtacttttacaaaaaaaaacactgttattttgtTTGTCTAGTAACGTTAGCTTCAGTGAATGTGAATTATTCTGTCTCAAATCATTCGTCTTAAATGTTCTGCCTCTTTCCGAATTAGCTAGCAGAACACCACTAGCATGGGGTATCTTCCTCGTACATGTGTCAGTTAAAAGTTAACGGCTAAGTTTGTAGTCACAAATGTGTTTCCTGCTTGATTAAAAAAGATGAGGACATTATATTTTTAGCACCTCTCTCTGCAATGTATCATAAAAATCGTAAACACTTTatcttttgatatatttatttgaaatattttagttTGCCCTAAaccatttgtttaatttaaaagatTAGATTTGCATTGCAATATCATCAATGATCTTGATATTTACCTAAACTCTTCTTTAAATTTGTGTTTCTTCATTAGAGAGATGTCAGAAGCATAAATGACATGATGGCCAGGAGATATAGCTGGGGAAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGTCATGATTTATCACTATCACATATATTAAATGATTTATCACTGACATGCTGCTCACTCTGTTTTTGTTTAAAGGCAAATAATGGTGAACAAAGATGTTTATGTGATGCTAGACACACTTTTTGCTGAACACATACTGAAAATTTTACCTCACATTTTATGGAGGATTTCATTGCATAAGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAAACAATTCATGTATTACAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCAGTTTTTATGTCCCAGCTGGACAAATACACTCAAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTCAACGCATCAATTGGAGTTATTGGAACTGAAACAGGTAAGGCAAACATGGTAACAATGTGGCTGATACATGTTTATGCAATAAGTACTTTATTTACTCATCTTGCCTAATAGGTGAATCGTGCAAAACAAAGTCATTCATTTTAaggataaatataaaaaaaagcatgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtatgtatgtatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagttgaACTCTGTTGAATAGGTTGTACAGAACCGCACTGATAATGACATTTTACGTTTGTAGTTATATTGCCTGCAATATTCCATTTTTTCATTATTCACTTACCAACTATAGGATCCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAGAGCTGATCTCTGACTACTATATGTAGTGGACATCATCATTGAGGGCATCCCTGTGCTGTCTTGGAAACCAGGCCAGGGCTCTGAACCTCCAGTATCCACCACAACTCAGCAAAACATTTAAGGTGTTTCAAAGACTTTTTGTGGGACTTGACACTGCGACTTGACACTGCGTCCAAAGTCTTCCTCCCGATTCATGACACAAAAACTTCTGAGTTAGTAAATTAGTTGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTTACTTGGAACAATGTGGTAGTTACGCACAGACTTCTTCAGTTCCTGGATAAGTCTGCAGCAAATATGggcattttgatttgcttttgtatatatgggcaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttattttaatgttgtagTACATATGAAAATGTACTGTACTGTGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073924 False 812 lncRNA 0.43 4 9286419 9289039
TCONS_00073923 False 988 lncRNA 0.43 5 9286419 9289060
TCONS_00073922 True 2232 lncRNA 0.36 2 9286419 9289070

Neighbor

gene id symbol gene type direction distance location
XLOC_037648 si:ch211-214p13.3 coding downstream 3900 9251466 ~ 9282519 (-)
XLOC_037647 u2af1 coding downstream 43642 9230446 ~ 9242777 (-)
XLOC_037646 cbsb coding downstream 57478 9180620 ~ 9228941 (-)
XLOC_037645 NA coding downstream 235904 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 coding downstream 262150 9009123 ~ 9024269 (-)
XLOC_037650 zgc:113337 coding upstream 33354 9322424 ~ 9348058 (-)
XLOC_037651 AL954142.4 coding upstream 66302 9355372 ~ 9370866 (-)
XLOC_037652 si:ch211-214p13.9 coding upstream 121939 9411009 ~ 9415000 (-)
XLOC_037653 si:ch211-214p13.9 coding upstream 126590 9415660 ~ 9419704 (-)
XLOC_037654 gsk3ba coding upstream 288673 9577743 ~ 9671244 (-)
XLOC_037638 NA non-coding downstream 1000211 8284155 ~ 8286208 (-)
XLOC_037637 NA non-coding downstream 1122424 8160341 ~ 8163995 (-)
XLOC_037636 NA non-coding downstream 1343822 7941769 ~ 7942597 (-)
XLOC_037663 NA non-coding upstream 1079310 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1556848 10845918 ~ 10846549 (-)
XLOC_037671 NA non-coding upstream 2282242 11571312 ~ 11572354 (-)
XLOC_037673 NA non-coding upstream 2306917 11595987 ~ 11655031 (-)

Expression


Co-expression Network