G1845461


Basic Information

Item Value
gene id G1845461
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24126944 ~ 24132598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2112773
CTTATTGCACAGacaagaatgtccctgtattttaTCTGGCCTGGTGAGACACTGATGACCTGATGAATCTTCATCGTTCCTTTAATGGCATCTAAGGCAGGCATCTGAGgacaaggacccaaaacacacctccaggctgggtaagggctatttgaccaagaaggagcggGATGGATtgctgaatcagatgacctggcctccacaatcacccgacctcaaaccagttgagatggtttggggtgaattggactacagagtgaaggaaaagcagacaacaattgctcagcatatgtgggaactccttcaagactattggaaaaacattccagggtaagctggttgagagaatgcc
>TU2112770
CTTATTGCACAGacaagaatgtccctgtattttaTCTGGCCTGGTGAGACACTGATGACCTGATGAATCTTCATCGTTCCTTTAATGGCATCTAAGGCAGGCATCTGAGatACCTTCTTTCTGGGTCAGCATTACGTCGTTCTCTGTATTGTCTTTCAGCTGCGCTAAGAGGAGGTGCCATTCCTTCAGAAAGACCTGATTCAATTGATATGTGTTTATTATTAAAATACTATACATGCTATACATACTTATAATTGTGTAATAAAATGTATgaacaaaaacatattttgcaaCACATTACTGCAATATATCAATTTCTCCACCCTGTTGAGTGCATGTCCACCCTGTTACATGTACATGGATAACAGGGTGGACAATAACAGGGTGAACATTTTGAGCTAAAATTAGCAACTATGCTCCAAGTGATCGTGATGAGGCTAAGATAATGACTGTCGCttgaaaatacattttcattGTTTGACAAATATATTATGAAATGTCTGTTGTATTTTTGCTTAACATGGTGAACATGTTATGCTTTCCCACATCACATCACCAACATATAATGATGAAAATGGAATAGTAGGAAATCAAGATACTCACCAGGTTCACCACAGTCATTTTCTGTTTGTGATGTCAttgtagaaaatatatattttcttaaagTACCAGTAACCACAATGTAACAGGGTGGACAACAACTTTGAGGACATACAGAAAATAGTCAatatttgtcacgttctgaccttagttcttgtgtgttttccttgttttagtgttggtcaggacgtgagctgg

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC103035877

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2112773 False 352 lncRNA 0.47 2 24126944 24132598
TU2112770 True 798 lncRNA 0.37 2 24131533 24132598

Neighbor

gene id symbol gene type direction distance location
LOC118943923 NA coding downstream 9264 24075852 ~ 24117680 (-)
LOC110503092 NA coding downstream 54455 24058972 ~ 24072489 (-)
LOC110502467 LOC106607187 coding downstream 89952 23867639 ~ 24036992 (-)
LOC110502466 LOC106608700 coding downstream 277801 23847056 ~ 23849143 (-)
LOC100136042 plek coding downstream 742625 23376144 ~ 23384319 (-)
gsto1 gsto1 coding upstream 41563 24174161 ~ 24183941 (-)
LOC110502475 LOC106607228 coding upstream 160301 24292899 ~ 24361215 (-)
LOC110502477 LOC106608714 coding upstream 387948 24520546 ~ 24630581 (-)
LOC110502481 smndc1 coding upstream 621967 24754565 ~ 24766770 (-)
LOC110502483 LOC106607298 coding upstream 674375 24806973 ~ 24813358 (-)
G1845407 NA non-coding downstream 13827 24100792 ~ 24113117 (-)
G1845445 NA non-coding downstream 27615 24099004 ~ 24099329 (-)
G1845262 NA non-coding downstream 260081 23866275 ~ 23866863 (-)
G1845261 NA non-coding downstream 261622 23864703 ~ 23865322 (-)
G1845469 NA non-coding upstream 8202 24140800 ~ 24141026 (-)
G1845471 NA non-coding upstream 10855 24143453 ~ 24146931 (-)
G1845481 NA non-coding upstream 18671 24151269 ~ 24178167 (-)
G1845501 NA non-coding upstream 62157 24194755 ~ 24195252 (-)
G1845627 NA non-coding upstream 261468 24394066 ~ 24403892 (-)
LOC110502462 LOC106607169 other downstream 781173 23344353 ~ 23358461 (-)
G1843946 NA other downstream 893521 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 908674 23213905 ~ 23218749 (-)
G1841959 NA other downstream 2755145 21345514 ~ 21371799 (-)
G1841694 NA other downstream 3183329 20943307 ~ 20943615 (-)
G1846858 NA other upstream 1307209 25439807 ~ 25440387 (-)
G1850441 NA other upstream 3942327 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 4792141 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 7019011 31151609 ~ 31239202 (-)
G1854905 NA other upstream 7084999 31217597 ~ 31218171 (-)

Expression


Co-expression Network