G1846045


Basic Information

Item Value
gene id G1846045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24836598 ~ 24837797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2113410
ctggtaacgctaatgaatttatcctctgcagcagaggtaactctgggtcttcctatcctgtggcggtcatgagagccagtttcatcatagtgcttgatggtttttgcaactgcacttgaagaaactttcaaagttcttgaaatgttccatattgactgaccttcaagtctgaaagtcatgatggactgtcatttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatcttctgtataccacccctaccttgtcacaacacaactgaatgtctcaaacgcaataagaaggaaagaaattccacaaattaacttttaacaatcaATCAATGAACTGTATTTAtcaagccctttttacatcagccaatgtcacaaagcactatacagaaacccagcctaacacCCCAAACAGCAtgtaatgcagatgtagaagcacggtggctaggaaaaactccttagaaaggcaggaacctaggaagaaacctagagaggaaccaggctctgaggggtggccagtcctctcctggctgtgcc
>TU2113409
tgtgcgtcgccatatgggactcccaatcacgtctggatgtgatacagcctgtattcgaacaggggactgtagtgacgccttttgcactgagatgcagtgccttagattgctgcgccattcgggagctcttacacagcctggaggtgtgctgggtcattgtcctgttgaaaaattgatgatagtcccacgaagcgcaaaccagattggatggcgtatcattgcaaaatgctgtggtagccattctggttaagtgtgccttgaattctaaatcaatcatagacagtgtcactagcaaagcaccccttataccatcacacctcctccaagcttcacggtgggaaccgcacatgcggagatcattcgttcacctaccctgcgtctcacaaagacatggcggttagaaccaaaatctaaaatttggacttatcagaccaaaggacagatttccaccagtctaatgtccattcctcgtgtttcttggcccaagcaagtctcttcttcttattggtgttctttagtattggtttcttaacagcaattcgaccatgaaggcctgattcacgcagtctcctctgaacagttaatgttgagatgtgtctgttacttgaactctgtgaagcatttttttgggctgaaatttctgaggctggtaacgctaatgaatttatcctctgcagcagaggtaactctgggtcttcctatcctgtggcggtcatgagagccagtttcatcatagtgcttgatggtttttgcaactgcacttgaagaaactttcaaagttcttgaaatgttccatattgactgaccttcaagtctgaaagtcatgatggactgtcatttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatcttctgtataccacccctaccttgtcacaacacaactgaatgtctcaaacgcaataagaaggaaagaaattccacaaattaacttttaacaatcaATCAATGAACTGTATTTAtcaagccctttttacatcagccaatgtcacaaagcactatacagaaacccagcctaacacCCCAAACAGCAtgtaatgcagatgtagaagc

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2113410 False 554 lncRNA 0.42 1 24836598 24837151
TU2113409 True 1100 lncRNA 0.43 1 24836698 24837797

Neighbor

gene id symbol gene type direction distance location
LOC110502483 LOC106607298 coding downstream 23240 24806973 ~ 24813358 (-)
LOC110502481 smndc1 coding downstream 69828 24754565 ~ 24766770 (-)
LOC110502477 LOC106608714 coding downstream 206017 24520546 ~ 24630581 (-)
LOC110502475 LOC106607228 coding downstream 475383 24292899 ~ 24361215 (-)
gsto1 gsto1 coding downstream 652657 24174161 ~ 24183941 (-)
LOC118943844 NA coding upstream 2112 24839909 ~ 24846204 (-)
gnrh1 gnrh1 coding upstream 289814 25127611 ~ 25128951 (-)
LOC110502487 LOC106607391 coding upstream 293459 25131256 ~ 25192325 (-)
LOC110503059 NA coding upstream 579567 25417364 ~ 25418599 (-)
LOC110503093 NA coding upstream 865459 25703256 ~ 25704420 (-)
G1846027 NA non-coding downstream 16522 24819302 ~ 24820076 (-)
G1845988 NA non-coding downstream 83754 24751032 ~ 24752844 (-)
G1845784 NA non-coding downstream 213905 24614539 ~ 24622693 (-)
G1845627 NA non-coding downstream 432706 24394066 ~ 24403892 (-)
G1846126 LOC106577027 non-coding upstream 47933 24885730 ~ 24889515 (-)
G1846180 NA non-coding upstream 110783 24948580 ~ 24948779 (-)
G1846283 NA non-coding upstream 185502 25023299 ~ 25023511 (-)
G1846287 NA non-coding upstream 188112 25025909 ~ 25026139 (-)
G1846483 NA non-coding upstream 286980 25124777 ~ 25125110 (-)
LOC110502462 LOC106607169 other downstream 1490827 23344353 ~ 23358461 (-)
G1843946 NA other downstream 1603175 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 1618328 23213905 ~ 23218749 (-)
G1841959 NA other downstream 3464799 21345514 ~ 21371799 (-)
G1841694 NA other downstream 3892983 20943307 ~ 20943615 (-)
G1846858 NA other upstream 602010 25439807 ~ 25440387 (-)
G1850441 NA other upstream 3237128 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 4086942 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 6313812 31151609 ~ 31239202 (-)
G1854905 NA other upstream 6379800 31217597 ~ 31218171 (-)

Expression


Co-expression Network