G1846446


Basic Information

Item Value
gene id G1846446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25129602 ~ 25130960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2113831
tagaacatagcacaaataaagaaacaccctggaatgagtaggtgtctccaaacttttgactggtactgtacatacagttgtACTAACTTTTTAAAGGTAGAATATATAGCATTTGTATGCTTTTCaaaataactacagtatattggaCCTAACATTTCAGCGTTTGCATGAAGCAGTGCCATACAAAGATTGGAAAACCTTTCTGATCAAGAAACAATTGTCAACAAGTGACTTCAACTTCAAGTAGACATAGATAAATTAAGAAGATAGATTCcaacaaaatatacattttactgTTTCCATATAGTTAATAAAACAGCCTTCATCTCTGTAATAAACATGATTGGTGTTAAGGGAAATTATTATAATAccaaaaatacattatttattcTGTTTATAGAGTTCTCAACTTGAAAAGTACAATTTAGAAACAGGCATCAATTTCCTCTTGATAAGGAGTGTTCAGTCATAGTGCCCTCATATCAATCACTAATTAACTTGATTATTAgtatcatttagcagacactcttatacaGAGCAACTTACGGTGCAATTATAGTGAAGTGTGTTGCTCAAGGGCACTTTGACAGTTTTGTCACCTAGTTGCCTCAGGGATTTCAAACCAGTGGTttttcagttactagcccaaccGCTAGGCAACACGTTCGGCTACCTGCCACCTGGTTATTGACAATAGCAAATTTCAGGATGCTAGTTTCTGGAATTTCAATGTACTGTCATTTACTGTgaaatatatacacagtatataaaTGTAATTTAACACAAATTTGAATTACTTGGTTACCTGGTTATTAAGTGTTGTTAGGCTATCCTTTTCATACCAAAGGTACATTTATGCATTCATAACCTCTAAGGAGTGGTTATCTGCAGCTCTGTTGGTAGAGgatggcacttgcaacgccagtATATAAGTGGGTTCGATTCTCAGGACCACCTGTATGTACTGTAAGCTAAATGGCAAACTGTATTAGGTAAAGATATAAGGATTGTGTCTTCATTTAGAATCAGTCTTATGTACTGAGTATGAAATTAAGGCTAGTGGTTGCTGTATTGCACAAGCATCTTGTTCCTGTACAGCctcttattttttttaccttaatttaactaggcaagtcagttaagaataaattcttattttcaatgacagcctaggaacagtgggttaactgccttgttcaggggaagaacaacatatttttgtcagcttggggatttgatcttgcaaccttccggttactagtccaaagctctaaccactaggttacctgccgccccaatcatAAGTCTGTATAAAGTTTACATTTTTATATTCTGAGTGCAATAAATGCAATGAAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2113831 True 1359 lncRNA 0.35 1 25129602 25130960

Neighbor

gene id symbol gene type direction distance location
gnrh1 gnrh1 coding downstream 651 25127611 ~ 25128951 (-)
LOC118943844 NA coding downstream 283398 24839909 ~ 24846204 (-)
LOC110502483 LOC106607298 coding downstream 316244 24806973 ~ 24813358 (-)
LOC110502481 smndc1 coding downstream 362832 24754565 ~ 24766770 (-)
LOC110502477 LOC106608714 coding downstream 499021 24520546 ~ 24630581 (-)
LOC110502487 LOC106607391 coding upstream 296 25131256 ~ 25192325 (-)
LOC110503059 NA coding upstream 286404 25417364 ~ 25418599 (-)
LOC110503093 NA coding upstream 572296 25703256 ~ 25704420 (-)
LOC110503094 edrf1 coding upstream 597528 25728488 ~ 25735408 (-)
LOC110502495 zranb1 coding upstream 753996 25884956 ~ 25932474 (-)
G1846483 NA non-coding downstream 4492 25124777 ~ 25125110 (-)
G1846287 NA non-coding downstream 103463 25025909 ~ 25026139 (-)
G1846283 NA non-coding downstream 106091 25023299 ~ 25023511 (-)
G1846180 NA non-coding downstream 180823 24948580 ~ 24948779 (-)
G1846126 LOC106577027 non-coding downstream 240087 24885730 ~ 24889515 (-)
G1846518 NA non-coding upstream 64702 25195662 ~ 25195874 (-)
G1846519 NA non-coding upstream 65924 25196884 ~ 25197084 (-)
G1846520 NA non-coding upstream 66801 25197761 ~ 25197973 (-)
G1846525 NA non-coding upstream 69836 25200796 ~ 25201140 (-)
G1846716 NA non-coding upstream 90212 25221172 ~ 25258790 (-)
LOC110502462 LOC106607169 other downstream 1783831 23344353 ~ 23358461 (-)
G1843946 NA other downstream 1896179 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 1911332 23213905 ~ 23218749 (-)
G1841959 NA other downstream 3757803 21345514 ~ 21371799 (-)
G1841694 NA other downstream 4185987 20943307 ~ 20943615 (-)
G1846858 NA other upstream 308847 25439807 ~ 25440387 (-)
G1850441 NA other upstream 2943965 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 3793779 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 6020649 31151609 ~ 31239202 (-)
G1854905 NA other upstream 6086637 31217597 ~ 31218171 (-)

Expression


Co-expression Network