G1848261


Basic Information

Item Value
gene id G1848261
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26544808 ~ 26546370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2115745
TCTTCAAACACATCAAatttccagagtgggctctcTGGTACTTTTAATTATATTACCAATTTCATACATAGAAATGTACATTACAGGTCATTAACCAATCACAGTCCTCTTTTAGGATTGCACATTCTGAaaatcaccagcagagggaggtctctttgaatccattttcccattcactctATTGGTGCTCATAAAATTCATCAGAGCTTAGCAGAGCCCACTCTGTGAATTTGATGTACTTGTAGAGTATATTGTTCCAAACAGTAACTCTTAAAATGAACTAAATCTAAATCTACTTTTGAGATATTAATATCAATATTTTTAATGTTGAATAAATCAATGGGAAATGTGTCTAGATTCTGAACTAAAATACTTGATATGTTACaacacactataaggagtataatgacactaagatgttgtctgtatcatttACGGTGTGTTCATGTGAGTGTCTCATCTGTAGGACTTTGTCTGGATTACGTGTATGGACCATTATCCTCTCTGTGAGGTCAGCCCAACTGCCACAGTAGGCCAGTAATCAAACCCTTATGGGGGCAGTAAAACTAaataaaaaacagccccacatCATTTTTATGTCCtccttgtgagtgtgtgtgtgtgtgtgtgtcatggctaAGCTCATACACATGCAAAGAAAATATTGTAAATCTAATCTCAGTCAGGGAGCAGTCCATCACagtgtgtctgtatgtttgtgtgtgtgtatgtgtgcgtgtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgaaagagagcaaTACAgaaagaggtggggagagaaagTGCTTGAAAAAGATTGTGATACGTGAGCTCTTCAGATTGATCCTTTCATCTCCAACATCAAAGTTACCATCATAAAACACTTAAGACTTTATTCTCTTCTCTGTAAGTGTCATCGACAAATACACCACAAAACTACAGTACTTAGAATAGGAATTTAGAAAAAAATAATTGCACAACTCGCTCAGAGCTGCTCTCTACATCGTTTTACATTGCCACGGTGGGCCTCCATCTGAACAATCAGTCAgtataaaaaaaacacagaacAAACAAGTCAAAACAGGTCAACTAGCTAGTGTTTAACAGTTAACAGTACTAGAAGCGAACAATAATAAAAGTGTAATACACATGGATGAGGAAGTACAACTCTGCTGAGATGCTCTATACAATCGTTCCTTTTCAAGGCGGAGTCCATGTGCATGATGCCACAAAGCCCTAAAGGCCACAGATTGGGGCGCGATTAAACACACATGTCCATATAAGGTCCATTGGTGATGCTAATGAGCATCAGCTCATGGGTGGGGCTGGGGGGTCAGGGGTCGATCTCCATGGGAACGATGGTGATGATGACGTCCTCGTTACTACGGCGCACCACCACCTGCAGCGTGGCATCTTTCTTGATGATGGTGCTCACGTCGGTTGCAGAGGAAATCCGCTGGCCGTTGATGGAGATGATGACATCATGCTCCTTCAGACCGCCA

Function

NR:

description
PREDICTED: serine protease HTRA1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2115745 True 1515 lncRNA 0.41 2 26544808 26546370

Neighbor

gene id symbol gene type direction distance location
cuzd1.2 LOC106607512 coding downstream 78918 26457010 ~ 26465890 (-)
LOC110502503 hmx3 coding downstream 138254 26403613 ~ 26406554 (-)
LOC110502502 hmx2 coding downstream 146675 26387522 ~ 26398133 (-)
LOC110502501 gpr26 coding downstream 314262 26226630 ~ 26230546 (-)
LOC110502496 fam175b coding downstream 596822 25939726 ~ 25947986 (-)
LOC110502513 LOC106607606 coding upstream 728182 27252967 ~ 27310171 (-)
LOC110502517 LOC106607615 coding upstream 877522 27423892 ~ 27435842 (-)
si:ch211-248a14.8 LOC106608780 coding upstream 903252 27449622 ~ 27453880 (-)
LOC110502526 LOC106607693 coding upstream 1303734 27850104 ~ 27859306 (-)
LOC110502525 LOC106607696 coding upstream 1313722 27860092 ~ 27983425 (-)
G1848203 NA non-coding downstream 76606 26467965 ~ 26468202 (-)
G1848195 NA non-coding downstream 96967 26446243 ~ 26447841 (-)
G1848183 NA non-coding downstream 117301 26427254 ~ 26427507 (-)
G1848177 NA non-coding downstream 126646 26417901 ~ 26418162 (-)
G1848675 NA non-coding upstream 30914 26577284 ~ 26587239 (-)
G1848704 NA non-coding upstream 64846 26611216 ~ 26624631 (-)
G1849386 NA non-coding upstream 735943 27282313 ~ 27282533 (-)
G1849390 NA non-coding upstream 738099 27284469 ~ 27284774 (-)
G1846858 NA other downstream 1104421 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 3199037 23344353 ~ 23358461 (-)
G1843946 NA other downstream 3311385 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 3326538 23213905 ~ 23218749 (-)
G1841959 NA other downstream 5173009 21345514 ~ 21371799 (-)
G1850441 NA other upstream 1528555 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 2378369 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 4605239 31151609 ~ 31239202 (-)
G1854905 NA other upstream 4671227 31217597 ~ 31218171 (-)
G1855326 NA other upstream 5433627 31979997 ~ 31981333 (-)

Expression


Co-expression Network