G1848401


Basic Information

Item Value
gene id G1848401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26766971 ~ 26819859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2115895
taaccagttaggctagttgagaacaagttctcatttacaactgcgacctggccaagatacagcaaagcagtttgacacatacaaaacagagttacacatggaataaacaaatatacagtcaataatacagtagaaaaagtctatatacagtgtgtgcaaatgaggtaggataagagaggtgaggcaataaataggccatgttggcgaagtaattacaatataccaattaaacactggaatggtagatgtgcagaagatgaatgtgcaagtagagatactggggtgcaaaggagcaagatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattggccgtgcaaaattatccaGCCCCCttcagttaatactttgtagcgccatcttttgctgcgattacagctgtaacttgcttggggtatgtctctatcagttttgcacatcgagagactgaaattatttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagatttgtgaacagcagttttcagttctttccacagattcttgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctctgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggatggtgtgttcagctgtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaa

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2115895 True 1061 lncRNA 0.40 2 26766971 26819859

Neighbor

gene id symbol gene type direction distance location
LOC110502510 LOC106607591 coding upstream 163886 26565286 ~ 26603085 (+)
LOC110502507 LOC106607527 coding upstream 221538 26515116 ~ 26545433 (+)
LOC110502508 LOC106607536 coding upstream 237609 26471360 ~ 26529362 (+)
LOC118943853 NA coding upstream 297357 26464542 ~ 26469614 (+)
LOC110502505 LOC106607516 coding upstream 310086 26441097 ~ 26456885 (+)
LOC110502514 LOC106608765 coding downstream 560400 27380259 ~ 27398338 (+)
LOC110502516 LOC106607607 coding downstream 581054 27400913 ~ 27414490 (+)
ecd ecd coding downstream 614953 27434812 ~ 27448641 (+)
LOC110503096 LOC106577060 coding downstream 653792 27473651 ~ 27485960 (+)
LOC110502521 LOC106607666 coding downstream 669354 27489213 ~ 27505393 (+)
G1848354 NA non-coding upstream 59267 26703515 ~ 26707704 (+)
G1848088 NA non-coding upstream 339918 26426847 ~ 26427053 (+)
G1848074 NA non-coding upstream 365123 26401634 ~ 26401848 (+)
G1848062 NA non-coding upstream 381281 26385362 ~ 26385690 (+)
G1848531 NA non-coding downstream 149292 26969151 ~ 26971834 (+)
G1849101 NA non-coding downstream 360275 27180134 ~ 27182928 (+)
G1849129 NA non-coding downstream 379928 27199787 ~ 27200000 (+)
G1849299 NA non-coding downstream 602345 27422204 ~ 27424989 (+)
G1845108 NA other upstream 2412725 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 3420482 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5981768 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6250085 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6701984 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 454479 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 1170415 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 1182016 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1678164 28497576 ~ 28571528 (+)
G1851386 NA other downstream 2223502 29043361 ~ 29075998 (+)

Expression


Co-expression Network