G1848400


Basic Information

Item Value
gene id G1848400
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26775973 ~ 26907050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2115894
taaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcacttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattactccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttgttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcacttttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2115894 True 785 lncRNA 0.41 3 26775973 26907050

Neighbor

gene id symbol gene type direction distance location
LOC110502510 LOC106607591 coding upstream 172888 26565286 ~ 26603085 (+)
LOC110502507 LOC106607527 coding upstream 230540 26515116 ~ 26545433 (+)
LOC110502508 LOC106607536 coding upstream 246611 26471360 ~ 26529362 (+)
LOC118943853 NA coding upstream 306359 26464542 ~ 26469614 (+)
LOC110502505 LOC106607516 coding upstream 319088 26441097 ~ 26456885 (+)
LOC110502514 LOC106608765 coding downstream 473209 27380259 ~ 27398338 (+)
LOC110502516 LOC106607607 coding downstream 493863 27400913 ~ 27414490 (+)
ecd ecd coding downstream 527762 27434812 ~ 27448641 (+)
LOC110503096 LOC106577060 coding downstream 566601 27473651 ~ 27485960 (+)
LOC110502521 LOC106607666 coding downstream 582163 27489213 ~ 27505393 (+)
G1848354 NA non-coding upstream 68269 26703515 ~ 26707704 (+)
G1848088 NA non-coding upstream 348920 26426847 ~ 26427053 (+)
G1848074 NA non-coding upstream 374125 26401634 ~ 26401848 (+)
G1848062 NA non-coding upstream 390283 26385362 ~ 26385690 (+)
G1848531 NA non-coding downstream 62101 26969151 ~ 26971834 (+)
G1849101 NA non-coding downstream 273084 27180134 ~ 27182928 (+)
G1849129 NA non-coding downstream 292737 27199787 ~ 27200000 (+)
G1849299 NA non-coding downstream 515154 27422204 ~ 27424989 (+)
G1845108 NA other upstream 2421727 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 3429484 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5990770 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6259087 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6710986 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 367288 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 1083224 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 1094825 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1590973 28497576 ~ 28571528 (+)
G1851386 NA other downstream 2136311 29043361 ~ 29075998 (+)

Expression


Co-expression Network