XLOC_037666 (si:ch1073-416j23.1)


Basic Information

Item Value
gene id XLOC_037666
gene name si:ch1073-416j23.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10781687 ~ 10805231 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073959
attaacccaggttactggcaaattaaaagtcctattagcatgcttcggcatataccctactAAAGCACTGGACAGACTTGAGATTTTTCCACTGCATCTTCTTGAAGTGCTTTCTTTTTACTTGACCTTTCTGCTCCACCTGGCCATTTCTCTTCACCCTCGtgtttttaaccatttaaaaatgttactgtGCGAGAGCCACACCAACGGGTGGCGCTAAAACAATAGGATCTCcaatgtgtcaaaataaaatgCGTTAACACGCAATAAACGCGTTTACACGTATTTAACCAGGTCAAGACATACCCTCCGCAGTGTTTGATGTCCACGTTCCACTCGTCATATACACCGCAGGCTGCCCGAGCTCTACCGGGCCAGCCTCTCCACCTTGCAGTCACGTGACACAATTAAAGCGGCTGCTTTGAGTTTGTCAAGGAAGGATCTTCAGATGACTCGACCATGGGCGATCAGTTTGTGCGAGAAGTGCTCAGCTTATGCTTGCAAAGGCTTGCTATTGAAGAAGCTTCTAACTCTGAGCTCGAATTTATTGAGGTGGTGAGAAACTTTGAAGCCGCCAGGAAGAAATGGCTGCATGCAGAGCTGGAGCTGAAGAAACAGAAGGAGCTGCTTGTGAAGTCTGATGTAGCTCGAGCTGCTCTGGAGGTCAAACTCAAACATGCTCGAAACCAGCTGGATGTGGAGATCAAGAAACGCTACAAAGCTGAGGCAGACTATCAATGTCTGGAGCGGCAGATGCAGCTGATATGTGATGTACTGGTGCATGACAGCAAGTCAAATGCCTGTCTGAATGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCATAAAGGAGCCTGTGTCCCGCAACACAGAGGAAAACGGTACTGTGACTCGTttcttcatttaatcctcacttTGCTGGTGCTTTTCTcagtttttaatgtaatttttcctTGTCTTTCCATCAGGTTATCAGTGATAGATGAATCCTCCTTTCTGTCGCACTCTGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAGCACTGCGTTTGTCAAGCCTCTCAAGTCAAGAGCTCGTGAGAGAAGACGTTCATCATTGGGCCCAGTTGTTAGTCTGCCAGTTCCAAAACGGGGAAGAATCAGCGGTCGTTCAGGAGATCTGCTGGTCTCTAGACCACTGGAGAAGGAAATCGAGACGACGGTTGTGAAGGCGTCTGTCAGTACTCCAGAGACTGGAAGTCAGATTCACATGGTAATAGACATAACCCAGGAGGCTCCAGAACATCCATCCAGAGCTCtcagaaatgaacatttttccTCTGTTGCTGAACAAACATCTGTGTGGGCTCACAGTGAAGTCATCCAGGCTGAGACGATGGTTGAAATGGAGGTGAGCGCCGTGGAGCCGGCCGTCCTTCAGGACCTCACGCCCACTGTGGAGAAAACTGTGCAGCATGTGTTCCAGCAGAAAACAGTGATTCGTCCTGAAACATGCTTGCCCTGTGGAAAACGCATTCGGTTTGGAAAGCTAGCTGTAAAATGCCGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACGCCTGTGTCCAGAGAGGTGCAGTCCTAATGCTCATGGTTCATCACACCCCAATGAGGAGACGTTAGAGAGCTTTGCCCCTTCCACACGTCCAAGGATTCCCTCTATCATTGTTCAGTGTGTTCACGAAATTGAGAGACGAGGACTTGAAGAGaaaggCATTTACAGAGTGCCAGGGGGAGAGCGGCAGGTGAAGGAACTGAGGGAGAAGTATCTTTACGGGAAAGGCCCACTGATGCTTCACAAAGTAGATGAGGTTCATGCTGTCTGCGGGCTCCTCAAAGACTTCCTGAGGAAACTCAGTGAGCCTCTCATCACATTTAAGCTTCACAGAACCTTCATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCGTAGAAACGTTATTAAAGACTATCAGAGAGCTGCCGCAGCCTAACAGAGACACCCTGGCCTTCCTAATGCTGCATTTACAGAGggtgaTGCAGAGTCCATTGTGTCAGATGGATCTGAATAACTTATCTAGAGTGTTTGGACCTACAATTATTGGCCACGCAATGTCAGAACCTTCTCCTATGACCATTATGAGAGACACGAACACACAACCCAGAGTAGTAGCTCGCTTACTGTCCTTCCCCTCAGATTTCTGGGAAGGTTTTCTTGCTGAGGAAAATGATCCAGTCAACCCTCCTGTGATCGAGACCAACATCGCTAGTGTCTGTCCAAGCACTAGCAGAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAAACTACATCCGGCGGCTCAATCAAGGGTCGGATAAAGCACTTTGGTGGCACTTTCAATAACCCaAGCAAACCAAGAAATGAACCCGGAAAAAAGAAATTCTTCACATCCCCCAAatgatgcgtttttttttttttttttggtttttgtaaCAAAATGTTACACTGGGACAATTTTCACTTCAGCACTTTATATCGTACCtcagaaaatgtatgaatgcaaGTCTgtccacaaaaaagaaaaaaaataataattaaacttttttcTGTAGAATGTTTCAGTGcatttgtaaatataattatGTATGGGAATGTCCTGCAAACTATCTAAATGTGGCTTAAACACATGGTGAAGAAGTATATTTAATAAAGCAGATGAATTCATGTTCTGTGTagtaatatatatgtttatatatttttttaagaatccATAAATGGGTGGACAGTGTCTGCAGAGGAGCCCTAAGAAGCGTTCATGTGTACCCCATATTGGTGccatcaaataaaatttacaaaaagtATTTTATATGCATAGAAAGCTGTTAAATATAagtgaaaaataattatatttgtgAAGGTTTGAGTGAAAATATCATTTGAGTGAAatcattcagtgtaaagctgcggtcacactggacttgtcTCCCCATAGACTCCATTCATACAAACACGAATACGTCAGCAGCTttacagataattttttttttgtttttttaaatctgacCTGTACTTcttactgtgtgtgtttatatatacacacactatgtATGTAATACAGAATatgtactttgtgtgtgtgtgtgtgtgtatacattgtatttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatatatatatatataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat
>TCONS_00073958
attaacccaggttactggcaaattaaaagtcctattagcatgcttcggcatataccctactAAAGCACTGGACAGACTTGAGATTTTTCCACTGCATCTTCTTGAAGTGCTTTCTTTTTACTTGACCTTTCTGCTCCACCTGGCCATTTCTCTTCACCCTCGtgtttttaaccatttaaaaatgttactgtGCGAGAGCCACACCAACGGGTGGCGCTAAAACAATAGGATCTCcaatgtgtcaaaataaaatgCGTTAACACGCAATAAACGCGTTTACACGTATTTAACCAGGTCAAGACATACCCTCCGCAGTGTTTGATGTCCACGTTCCACTCGTCATATACACCGCAGGCTGCCCGAGCTCTACCGGGCCAGCCTCTCCACCTTGCAGTCACGTGACACAATTAAAGCGGCTGCTTTGAGTTTGTCAAGGAAGGATCTTCAGATGACTCGACCATGGGCGATCAGTTTGTGCGAGAAGTGCTCAGCTTATGCTTGCAAAGGCTTGCTATTGAAGAAGCTTCTAACTCTGAGCTCGAATTTATTGAGGTGGTGAGAAACTTTGAAGCCGCCAGGAAGAAATGGCTGCATGCAGAGCTGGAGCTGAAGAAACAGAAGGAGCTGCTTGTGAAGTCTGATGTAGCTCGAGCTGCTCTGGAGGTCAAACTCAAACATGCTCGAAACCAGCTGGATGTGGAGATCAAGAAACGCTACAAAGCTGAGGCAGACTATCAATGTCTGGAGCGGCAGATGCAGCTGATATGTGATGTACTGGTGCATGACAGCAAGTCAAATGCCTGTCTGAATGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCATAAAGGAGCCTGTGTCCCGCAACACAGAGGAAAACGGTTATCAGTGATAGATGAATCCTCCTTTCTGTCGCACTCTGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAGCACTGCGTTTGTCAAGCCTCTCAAGTCAAGAGCTCGTGAGAGAAGACGTTCATCATTGGGCCCAGTTGTTAGTCTGCCAGTTCCAAAACGGGGAAGAATCAGCGGTCGTTCAGGAGATCTGCTGGTCTCTAGACCACTGGAGAAGGAAATCGAGACGACGGTTGTGAAGGCGTCTGTCAGTACTCCAGAGACTGGAAGTCAGATTCACATGGTAATAGACATAACCCAGGAGGCTCCAGAACATCCATCCAGAGCTCtcagaaatgaacatttttccTCTGTTGCTGAACAAACATCTGTGTGGGCTCACAGTGAAGTCATCCAGGCTGAGACGATGGTTGAAATGGAGGTGAGCGCCGTGGAGCCGGCCGTCCTTCAGGACCTCACGCCCACTGTGGAGAAAACTGTGCAGCATGTGTTCCAGCAGAAAACAGTGATTCGTCCTGAAACATGCTTGCCCTGTGGAAAACGCATTCGGTTTGGAAAGCTAGCTGTAAAATGCCGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACGCCTGTGTCCAGAGAGGTGCAGTCCTAATGCTCATGGTTCATCACACCCCAATGAGGAGACGTTAGAGAGCTTTGCCCCTTCCACACGTCCAAGGATTCCCTCTATCATTGTTCAGTGTGTTCACGAAATTGAGAGACGAGGACTTGAAGAGaaaggCATTTACAGAGTGCCAGGGGGAGAGCGGCAGGTGAAGGAACTGAGGGAGAAGTATCTTTACGGGAAAGGCCCACTGATGCTTCACAAAGTAGATGAGGTTCATGCTGTCTGCGGGCTCCTCAAAGACTTCCTGAGGAAACTCAGTGAGCCTCTCATCACATTTAAGCTTCACAGAACCTTCATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCGTAGAAACGTTATTAAAGACTATCAGAGAGCTGCCGCAGCCTAACAGAGACACCCTGGCCTTCCTAATGCTGCATTTACAGAGggtgaTGCAGAGTCCATTGTGTCAGATGGATCTGAATAACTTATCTAGAGTGTTTGGACCTACAATTATTGGCCACGCAATGTCAGAACCTTCTCCTATGACCATTATGAGAGACACGAACACACAACCCAGAGTAGTAGCTCGCTTACTGTCCTTCCCCTCAGATTTCTGGGAAGGTTTTCTTGCTGAGGAAAATGATCCAGTCAACCCTCCTGTGATCGAGACCAACATCGCTAGTGTCTGTCCAAGCACTAGCAGAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAAACTACATCCGGCGGCTCAATCAAGGGTCGGATAAAGCACTTTGGTGGCACTTTCAATAACCCaAGCAAACCAAGAAATGAACCCGGAAAAAAGAAATTCTTCACATCCCCCAAatgatgcgtttttttttttttttttggtttttgtaaCAAAATGTTACACTGGGACAATTTTCACTTCAGCACTTTATATCGTACCtcagaaaatgtatgaatgcaaGTCTgtccacaaaaaagaaaaaaaataataattaaacttttttcTGTAGAATGTTTCAGTGcatttgtaaatataattatGTATGGGAATGTCCTGCAAACTATCTAAATGTGGCTTAAACACATGGTGAAGAAGTATATTTAATAAAGCAGATGAATTCATGTTCTGTGTagtaatatatatgtttatatatttttttaagaatccATAAATGGGTGGACAGTGTCTGCAGAGGAGCCCTAAGAAGCGTTCATGTGTACCCCATATTGGTGccatcaaataaaatttacaaaaagtATTTTATATGCATAGAAAGCTGTTAAATATAagtgaaaaataattatatttgtgAAGGTTTGAGTGAAAATATCATTTGAGTGAAatcattcagtgtaaagctgcggtcacactggacttgtcTCCCCATAGACTCCATTCATACAAACACGAATACGTCAGCAGCTttacagataattttttttttgtttttttaaatctgacCTGTACTTcttactgtgtgtgtttatatatacacacactatgtATGTAATACAGAATatgtactttgtgtgtgtgtgtgtgtgtatacattgtatttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatatatatatatataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat
>TCONS_00073960
GAAGGATCTTCAGATGACTCGACCATGGGCGATCAGTTTGTGCGAGAAGTGCTCAGCTTATGCTTGCAAAGGCTTGCTATTGAAGAAGCTTCTAACTCTGAGCTCGAATTTATTGAGGTGGTGAGAAACTTTGAAGCCGCCAGGAAGAAATGGCTGCATGCAGAGCTGGAGCTGAAGAAACAGAAGGAGCTGCTTGTGAAGTCTGATGTAGCTCGAGCTGCTCTGGAGGTCAAACTCAAACATGCTCGAAACCAGCTGGATGTGGAGATCAAGAAACGCTACAAAGCTGAGGCAGACTATCAATGTCTGGAGCGGCAGATGCAGCTGATATGTGATGTACTGGTGCATGACAGCAAGTCAAATGCCTGTCTGAATGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCATAAAGGAGCCTGTGTCCCGCAACACAGAGGAAAACGGTTATCAGTGATAGATGAATCCTCCTTTCTGTCGCACTCTGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAGCACTGCGTTTGTCAAGCCTCTCAAGTCAAGAGCTCGTGAGAGAAGACGTTCATCATTGGGCCCAGTTGTTAGTCTGCCAGTTCCAAAACGGGGAAGAATCAGCGGTCGTTCAGGAGATCTGCTGGTCTCTAGACCACTGGAGAAGGAAATCGAGACGACGGTTGTGAAGGCGTCTGTCAGTACTCCAGAGACTGGAAGTCAGATTCACATGGTAATAGACATAACCCAGGAGGCTCCAGAACATCCATCCAGAGCTCtcagaaatgaacatttttccTCTGTTGCTGAACAAACATCTGTGTGGGCTCACAGTGAAGTCATCCAGGCTGAGACGATGGTTGAAATGGAGGTGAGCGCCGTGGAGCCGGCCGTCCTTCAGGACCTCACGCCCACTGTGGAGAAAACTGTGCAGCATGTGTTCCAGCAGAAAACAGTGATTCGTCCTGAAACATGCTTGCCCTGTGGAAAACGCATTCGGTTTGGAAAGCTAGCTGTAAAATGCCGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACGCCTGTGTCCAGAGAGGTGCAGTCCTAATGCTCATGGTTCATCACACCCCAATGAGGAGACGTTAGAGAGCTTTGCCCCTTCCACACGTCCAAGGATTCCCTCTATCATTGTTCAGTGTGTTCACGAAATTGAGAGACGAGGACTTGAAGAGaaaggCATTTACAGAGTGCCAGGGGGAGAGCGGCAGGTGAAGGAACTGAGGGAGAAGTATCTTTACGGGAAAGGCCCACTGATGCTTCACAAAGTAGATGAGGTTCATGCTGTCTGCGGGCTCCTCAAAGACTTCCTGAGGAAACTCAGTGAGCCTCTCATCACATTTAAGCTTCACAGAACCTTCATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCGTAGAAACGTTATTAAAGACTATCAGAGAGCTGCCGCAGCCTAACAGAGACACCCTGGCCTTCCTAATGCTGCATTTACAGAGggtgaTGCAGAGTCCATTGTGTCAGATGGATCTGAATAACTTATCTAGAGTGTTTGGACCTACAATTATTGGCCACGCAATGTCAGAACCTTCTCCTATGACCATTATGAGAGACACGAACACACAACCCAGAGTGAGTAGC

Function

symbol description
si:ch1073-416j23.1 Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-35 Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000055934

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073959 False 3344 mRNA 0.42 15 10781687 10805231
TCONS_00073958 False 3257 mRNA 0.42 16 10781687 10805231
TCONS_00073960 True 1668 mRNA 0.49 13 10787279 10804796

Neighbor

gene id symbol gene type direction distance location
XLOC_037665 CABZ01053619.1 coding downstream 3072 10778227 ~ 10778615 (-)
XLOC_037664 tmbim1b coding downstream 12590 10758339 ~ 10769097 (-)
XLOC_037662 thsd7ba coding downstream 249096 10152820 ~ 10532591 (-)
XLOC_037663 NA coding downstream 411062 10368380 ~ 10370625 (-)
XLOC_037661 hnmt coding downstream 635807 10138196 ~ 10145880 (-)
XLOC_037667 BX000444.1 coding upstream 40687 10845918 ~ 10846549 (-)
XLOC_037668 chpfa coding upstream 440731 11245962 ~ 11263228 (-)
XLOC_037669 fev coding upstream 743002 11548233 ~ 11551704 (-)
XLOC_037670 cryba2b coding upstream 748858 11554089 ~ 11560432 (-)
XLOC_037671 NA coding upstream 766081 11571312 ~ 11572354 (-)
XLOC_037651 AL954142.4 non-coding downstream 1410821 9355372 ~ 9370866 (-)
XLOC_037649 NA non-coding downstream 1492617 9286419 ~ 9289070 (-)
XLOC_037645 NA non-coding downstream 1731172 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 non-coding downstream 1757418 9009123 ~ 9024269 (-)
XLOC_037673 NA non-coding upstream 790756 11595987 ~ 11655031 (-)
XLOC_037675 NA non-coding upstream 1017148 11822379 ~ 11855305 (-)
XLOC_037677 NA non-coding upstream 1271612 12076843 ~ 12171785 (-)

Expression


Co-expression Network