G1849304


Basic Information

Item Value
gene id G1849304
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27449059 ~ 27456847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2116846
tatttaatgcaacagtttttgtgacaacaATGGGTAGAGTAGAAAATGCACGTTGAACTGATTTTTATTCGGTATATCTACATGAATTTACAAAAGTCCTATCAACTGATTTCAGCCTGTGTATTGTATGTCTGTGGATTGACTGCGTTGTTTGAATTGAATATTGGTAGTTGGAAAAATGCATGGAATCATTCCTCTAAATTTGGATGGCTAGCTAACAAACACAGTGCATATACATTCTTCAAATGCATTATTTTACACTATCTTATAGCACTGGCGAACCATGGTTGAATGGCTGACATTTACCTTATAAAGTTGAAGATTATTCTAGTAATTTGATGGTCATGTGCTTGCTTTTTATCATTTGTcttttgtagctcagttggtggtGCTTGTAACGCCAGGGTAGTGAGTTCGATTCCCGCGACCGTCCATATGTAAAACCTATACACGCATGACTAAGTTGCTtcggataaaagcgtctgctaaatgccGTATGTTACATTATCCCCAACAAGTTGGTTCTTTATGCATATATTCACatgattggatggaaacctagctactgttaACTTTTATTGTTGCATTTGGGGATTTGAAAAACCTTGAGGTAGACAGTATCTTTACACTTGAACTGTAATGCTTATCATTTCGTTTATTAATTACACCACTCTGAACTAGCAGCCTTATGACATATTCCCAGTCACATTCTGAGCATTTCTGTATGGTTGATAATCCAGTGCAAAGATTTTATCCAGTCTCCCTACATATTGAGTGCCTTTTCAAACCATTTTATATAGGTTCAGTAGTAAGTATGATATACAGGATAAGAAGGAACACAAGCGCTGGTAATTAAAGTGCTGCACCTAGGGAGGTGACTTTGTACTACAGAGAGTGAATAATACTGCTCTGTAGTACAACTATCCTTCTACTGGTAGAAGTTGACCAtatatcttgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagataacttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatatagacaGATCTAGGAAAAGATTATCCTTACCATATCCTCCCTTTAACCATTAACTTTTACAGAtccacaattgagagcatcctgtcaggctgtatcaccgcctggtacagcaactgctccaccctcaactgcaaggctctacagagggtggtgtggtctgcacaacgcatctccgggggcaaactacctgccctccatgacaactatagcacccgatgtcacaggaaggcaaaaaagatcaaggacaataaccacccgagccactgtctgtttacaccactaccatccagaaggcgaggtcagtacaggtgcatcaaagctgggactgagagactgaaaaacagcttctatctcaaggccatcagactgcttaaCAGCAATTACTAACTccgagaggctgctgcctacatggagacccaatcactggccgcttttacaaatggatcactagtcacgttaatatactgtattttataccatctattgcaccttgcctatgccgctcggccatcgctcatccatatgtacatattctcattcaaccctttttagatttgtgtgtattaggtagatgttggggaattgttagatattactgcgctgtcggaaccagaagcacaagcattttgctacactcgcattaacatctgctaaccatgtgtatgtgacaaatgcaatttgatttgaggGAGGCAACTGACTTCTGACTAGTCTCTAGAGTCAACTTCATCCTCCTCCATGTTGGATCATCTACAACAGGCTGTACAACGGTCTTGTTAATCCGTGTGCCGTGTGGAGTAGCGCTGCAGCCAGCGGTGAGAAGGTCAGAGCGGCCATGTCCACCAAGAGGTGCTGTAGAGCTCCCAGCAGCAGTATCGCCAGCAGGTAGCCCATGAAGAGCAGGCTGTGCCAGCTACCCTCGCCCAGTGCCCGGGGGCCCTCTGGGTGCAGCAGGCACAGGAAGCCAAGCACCAGGCTCTGGTTCACCATCAGGGTGAAGTACAGGTCAAAAGGTGAGATGTGGGAGCTGCTGTGGTGCCGGTGCTCGGTCTCAGCCACCTTGGCCAGCCAGGTCAGAGAAAGGCTGTGTAGAAGGAGGGCCAGCGGGGCGTAGAGACACTCCAGAACCTCCACTGACGGGAGACCTTGAGACGCTGCAAGGAGAAGGGgacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgaccgtgctgctgctccagtttcaactgttctg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2116846 True 2448 lncRNA 0.44 2 27449059 27456847

Neighbor

gene id symbol gene type direction distance location
ecd ecd coding upstream 418 27434812 ~ 27448641 (+)
LOC110502516 LOC106607607 coding upstream 34569 27400913 ~ 27414490 (+)
LOC110502514 LOC106608765 coding upstream 50721 27380259 ~ 27398338 (+)
LOC110502511 LOC106607602 coding upstream 302554 26695559 ~ 27146505 (+)
LOC110502510 LOC106607591 coding upstream 845974 26565286 ~ 26603085 (+)
LOC110503096 LOC106577060 coding downstream 16804 27473651 ~ 27485960 (+)
LOC110502521 LOC106607666 coding downstream 32366 27489213 ~ 27505393 (+)
LOC110502522 NA coding downstream 51548 27508395 ~ 27516541 (+)
LOC110502523 LOC106607673 coding downstream 308971 27765818 ~ 27769060 (+)
LOC110503097 LOC106577081 coding downstream 333912 27790759 ~ 27848517 (+)
G1849299 NA non-coding upstream 24070 27422204 ~ 27424989 (+)
G1849129 NA non-coding upstream 249059 27199787 ~ 27200000 (+)
G1849101 NA non-coding upstream 266131 27180134 ~ 27182928 (+)
G1848531 NA non-coding upstream 477225 26969151 ~ 26971834 (+)
G1849558 NA non-coding downstream 101992 27558839 ~ 27559542 (+)
G1849565 NA non-coding downstream 107014 27563861 ~ 27564082 (+)
G1849592 NA non-coding downstream 127641 27584488 ~ 27584826 (+)
G1849647 NA non-coding downstream 163471 27620318 ~ 27620535 (+)
G1849208 LOC106607606 other upstream 172800 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3094813 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4102570 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6663856 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6932173 20358591 ~ 20516930 (+)
LOC110502527 LOC106607701 other downstream 533427 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 545028 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1041176 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1586514 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2561643 30018490 ~ 30025046 (+)

Expression


Co-expression Network