G1849660


Basic Information

Item Value
gene id G1849660
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27770035 ~ 27770506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2117229
ccttcaatgacgCAGATttttttgggtacccttccccagatatgtgcctccacataatcctgtctctgagctctacagacaaattcttcaagctcattgcttgatttttgctctgacatgcactgtaaatcaTTTGTAAtacttttgcaaaaatgtctaaaaacctgtttttgctttgtcattgtggggtattgtgtgtagattgatgataaaaaaaaaagatagaataaggctgtaacttagaaccacccatcccggatctggtatatttgtcatcagcaacgctgaatagcatagca

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2117229 True 299 lncRNA 0.38 2 27770035 27770506

Neighbor

gene id symbol gene type direction distance location
LOC110502523 LOC106607673 coding upstream 975 27765818 ~ 27769060 (+)
LOC110502522 NA coding upstream 253494 27508395 ~ 27516541 (+)
LOC110502521 LOC106607666 coding upstream 264642 27489213 ~ 27505393 (+)
LOC110503096 LOC106577060 coding upstream 284075 27473651 ~ 27485960 (+)
ecd ecd coding upstream 321394 27434812 ~ 27448641 (+)
LOC110503097 LOC106577081 coding downstream 20253 27790759 ~ 27848517 (+)
LOC110502527 LOC106607701 coding downstream 219739 27990245 ~ 27993189 (+)
LOC110502528 bic1a coding downstream 230785 28001291 ~ 28078254 (+)
LOC110502531 LOC106607719 coding downstream 327941 28098447 ~ 28140673 (+)
LOC110502539 LOC106607826 coding downstream 691949 28462455 ~ 28466290 (+)
G1849652 NA non-coding upstream 145632 27624104 ~ 27624403 (+)
G1849647 NA non-coding upstream 149500 27620318 ~ 27620535 (+)
G1849592 NA non-coding upstream 185209 27584488 ~ 27584826 (+)
G1849565 NA non-coding upstream 205953 27563861 ~ 27564082 (+)
G1849558 NA non-coding upstream 210493 27558839 ~ 27559542 (+)
G1849658 NA non-coding downstream 1413 27771919 ~ 27772208 (+)
G1849821 NA non-coding downstream 103938 27874444 ~ 27876182 (+)
G1849835 NA non-coding downstream 124623 27895129 ~ 27907142 (+)
G1850012 NA non-coding downstream 458055 28228561 ~ 28230666 (+)
G1849208 LOC106607606 other upstream 493776 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3415789 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4423546 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6984832 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 7253149 20358591 ~ 20516930 (+)
LOC110502541 LOC106607837 other downstream 727517 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1272855 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2247984 30018490 ~ 30025046 (+)

Expression


Co-expression Network