G1850248


Basic Information

Item Value
gene id G1850248
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27771213 ~ 27772250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2117843
GTTAGTCATTTTATCTAACTTCAGGTAGTTCACATCTCAAACATAAACACTTCCCTTGATCAGGAGTATAATAACACCGTAGCACGTGGTGTTGAAAGCAGCTGAAATATCCATTGGCAATTCAGACACTGAATAATTTCTCTTTCATCATTATCTGGCTTACATACCCCATTGGGTGACACTTTATAATAACGTTCCTGTCTGATCGTTATTAGAAAGTGTTTCCCCACATGGTAGCATTCTGTTATTCTACTCAATATCACATACTCAACATGCCTGTGGTACATATATGGTATTTGCTTTCACTATCCCTTTACAAACCTAAGTGTAATACATACACTTATACAGCAAAAATATTTCAAACAGTATTCATCACATTTAGGCCTGAACCACTGTGCATAACATAATAACAATACATTAAAATGTAACTATTACATTATTTTAGCACTGTGTGATATTAAAACATGTATAGAAATCACCATAAATCACACTGTTTGCACAGCCAAATAACTTTATGTACAATTGATAGAAATGTTCAATTTTGGAAATCACTGAAATGAAAAGCACCACTATTCAGCTCCATATGTCATATGTAGCAGGTCTAAGCTAGTCTATCCAGACTCTTTTGAGTTTTGTATCTGTTTTGTATCTGATTTCTGGCCAGAGGAGAGGAGCAAACTCCTCCGTTTGCTTAACCAATTGAAACTCTCCTACATATAGTGAATTTGGAAAGGGTTCAGacactgactttttccacattttggagctagggggcactattgaagctagggggcactattgaAGCTAGgaggcactatttttatgtttagaaaaataacgttcccaaagtaaacaacctatttctcaggaccagatgctagaatatgcatataattgacagcttgggatagaaaacactctaaagtttccaaactgtaaaaatattgtctgtgagtataacagaacttatattgcaggcgaaagcttgagaaaaatccaatcagaaagtgactcttattttgcaacccctgtctttct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2117843 True 1038 lncRNA 0.36 1 27771213 27772250

Neighbor

gene id symbol gene type direction distance location
si:ch211-248a14.8 LOC106608780 coding downstream 317333 27449622 ~ 27453880 (-)
LOC110502517 LOC106607615 coding downstream 335371 27423892 ~ 27435842 (-)
LOC110502513 LOC106607606 coding downstream 461042 27252967 ~ 27310171 (-)
cuzd1.2 LOC106607512 coding downstream 1305323 26457010 ~ 26465890 (-)
LOC110502503 hmx3 coding downstream 1364659 26403613 ~ 26406554 (-)
LOC110502526 LOC106607693 coding upstream 77854 27850104 ~ 27859306 (-)
LOC110502525 LOC106607696 coding upstream 87842 27860092 ~ 27983425 (-)
LOC110502532 NA coding upstream 343345 28115595 ~ 28120442 (-)
fam13c LOC106607716 coding upstream 366918 28139168 ~ 28148897 (-)
LOC110502533 mot9 coding upstream 408836 28181086 ~ 28197583 (-)
G1850246 NA non-coding downstream 1760 27768955 ~ 27769453 (-)
G1850245 NA non-coding downstream 2547 27767804 ~ 27768666 (-)
G1849641 NA non-coding downstream 154236 27616567 ~ 27616977 (-)
G1849628 NA non-coding downstream 162452 27608361 ~ 27608761 (-)
G1849622 LOC107663003 non-coding downstream 168169 27602807 ~ 27603044 (-)
G1850249 NA non-coding upstream 1882 27774132 ~ 27774402 (-)
G1850380 LOC106607701 non-coding upstream 217934 27990184 ~ 27992969 (-)
G1850489 NA non-coding upstream 364314 28136564 ~ 28137101 (-)
G1850494 NA non-coding upstream 377365 28149615 ~ 28149901 (-)
G1846858 NA other downstream 2330826 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 4425442 23344353 ~ 23358461 (-)
G1843946 NA other downstream 4537790 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 4552943 23213905 ~ 23218749 (-)
G1841959 NA other downstream 6399414 21345514 ~ 21371799 (-)
G1850441 NA other upstream 302675 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 1152489 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 3379359 31151609 ~ 31239202 (-)
G1854905 NA other upstream 3445347 31217597 ~ 31218171 (-)
G1855326 NA other upstream 4207747 31979997 ~ 31981333 (-)

Expression


Co-expression Network