G1850380 (LOC106607701)


Basic Information

Item Value
gene id G1850380
gene name LOC106607701
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27990184 ~ 27992969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2117982
AGATGAGGGATGGGACTGgattcatatatatatttttaaatctttATGGCCATCTCAGCAATAACTGAATAATAATTTATATAACATTGGGAATGTCAAAGAAAATAATGAGTTCAAAGCATAAAAACAGTTAATTTGGGCATAGAAAGTGCTTCCCATATAAAACACTTTCTTGAACCAGTGTGGATGAGGGGTGGCAACAGTACTTTGTTTTCAGAGGTGTCCAGGAAATACATTTGCTTAAGCTTTTTCCGTTGTCTAAAACGTCAGTCCTTTACATTGCATACTTTTGAGTCCAATCTCTTGCTAATCTGTTGTACTTTCTTTGTCCTGCTTGTAGATGTGTGCTATGTCTGGGACTAGGGGGTCATCTGGGTTTGGGTCACATAGCAAAGAACATATGGACAATAAAACTTTCGAAACTGTAAGTGCTGGGGACCACTGTGACCTCAGAATGTCCAGACAAATGCTACCATTACTGTTTATGTTTGGGTGATAGATTTTCGTTGTGAAGGCTACCTTTGGTGGTTTGAAGGGATAGTCTGTGGGGAAGTGGATGGTGAGGAAGAATACTCCTCCCTGATATGGGCTGTCAGTAGGTCCCATGATGGTGGCTTGCCAATGAAACAAGTCCTCTCCAACTGGTCCAGCTGAGCATTGAGCAGGAGGGTCCCTTTGCAAGTCATGCAActcCTTCTGTATTCTTTTCAAAGCCATGTCAGCCCCCTGCTTTAGATGTATGATGTAACGACTGGACACTGTCAGTTGTATACCCGTTTCTCGGCTCAGCTCACAAAAATTAGTTTTGAGATATGTATGATTTCTTTTGTTTCCGCTTTTTGTTCGAGGAAGCAAACCGCGGGGAATTCTGGGGATTATAGTTTTTACTTCTAACATCAGCCTGTTAAAGTGACAG
>TU2117983
AGATGAGGGATGGGACTGgattcatatatatatttttaaatctttATGGCCATCTCAGCAATAACTGAATAATAATTTATATAACATTGGGAATGTCAAAGAAAATAATGAGTTCAAAGCATAAAAACAGTTAATTTGGGCATAGAAAGTGCTTCCCATATAAAACACTTTCTTGAACCAGTGTGGATGAGGGGTGGCAACAGTACTTTGTTTTCAGAGGTGTCCAGGAAATACATTTGCTTAAGCTTTTTCCGTTGTCTAAAACGTCAGTCCTTTACATTGCATACTTTTGAGTCCAATCTCTTGCTAATCTGTACTTTTCTTTGTCCTGCTTGTAGATGTGTGCTATGTCTGGGACTAGGGGGTCATCTGGGTTTGGGTCACATAGCAAAGAACATATGGACAATAAAACTTTCGAAACTGTAAGTGCTGGGGACCACTGTGACCTCAGAATGTCCAGACAAATGCTACCATTACTGTTTATGTTTGGGTGATAGATTTTCGTTGTGAAGGCTACCTTTGGTGGTTTGAAGGGATAGTCTGTGGGGAAGTGGATGGTGAGGAAGAATACTCCTCCCTGATATGGGCTGTCAGTAGGTCCCATGATGGTGGCTTGCCAATGAAACAAGTCCTCTCCAACTGGTCCAGCTGAGCATTGAGCAGGAGGGTCCCTTTGCAAGTCATGCAActcCTTCTGTATTCTTTTCAAAGCCATGTCAGCCCCCTGCTTTAGATGTATGATGTAACGACTGGACACTGTCAGTTGTATACCCGTTTCTCGGCTCAGCTCACAAAAATTAGTTTTGAGATATGTATGATTTCTTTTGTTTCCGCTTTTTGTTCGAGGAAGCAAACCGCGGGGAATTCTGGGGATTATAGTTTTTACTTCTAACATCAGCCTGTTAAAGTGACAG
>TU2117984
AGATGAGGGATGGGACTGgattcatatatatatttttaaatctttATGGCCATCTCAGCAATAACTGAATAATAATTTATATAACATTGGGAATGTCAAAGAAAATAATGAGTTCAAAGCATAAAAACAGTTAATTTGGGCATAGAAAGTGCTTCCCATATAAAACACTTTCTTGAACCAGTGTGGATGAGGGGTGGCAACAGTACTTTGTTTTCAGAGGTGTCCAGGAAATACATTTGCTTAAGCTTTTTCCGTTGTCTAAAACGTCAGTCCTTTACATTGCATACTTTTGAGTCCAATCTCTTGCTAATCTGTTGGAAGAACAAAAGGTGAGGATAACCAGGATGAGTTTATTTTGCAATTACACCGTCACAATAGTCAAGGGCAACAGTTGAACAAATTAGGAAAACATTTGAGATGCATTTTGCTTTAATTATTTCATATTGTGCAATTAGGGTAGAAACGAGACAAAACAAAGTTGGTTTACAAACTGTGAATGTGAGCCAGTTTGTCTTACCTTTCGAAACTGTAAGTGCTGGGGACCACTGTGACCTCAGAATGTCCAGACAAATGCTACCATTACTGTTTATGTTTGGGTGATAGATTTTCGTTGTGAAGGCTACCTTTGGTGGTTTGAAGGGATAGTCTGTGGGGAAGTGGATGGTGAGGAAGAATACTCCTCCCTGATATGGGCTGTCAGTAGGTCCCATGATGGTGGCTTGCCAATGAAACAAGTCCTCTCCAACTGGTCCAGCTGAGCATTGAGCAGGAGGGTCCCTTTGCAAGTCATGCAActcCTTCTGTATTCTTTTCAAAGCCATGTCAGCCCCCTGCTTTAGATGTATGATGTAACGACTGGACACTGTCAGTTGTATACCCGTTTCTCGGCTCAGCTCACAAAAATTAGTTTTGAGATATGTATGATTTCTTTTGTTTCCGCTTTTTGTTCGAGGAAGCAAACCGCGGGGAATTCTGGGGATTATAGTTTTTACTTCTAACATCAGCCTGTTAAAGTGACAG

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 D4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2117982 False 916 lncRNA 0.41 7 27990184 27992969
TU2117983 False 914 lncRNA 0.41 7 27990184 27992969
TU2117984 True 1020 lncRNA 0.40 6 27990184 27992969

Neighbor

gene id symbol gene type direction distance location
LOC110502525 LOC106607696 coding downstream 6759 27860092 ~ 27983425 (-)
LOC110502526 LOC106607693 coding downstream 130878 27850104 ~ 27859306 (-)
si:ch211-248a14.8 LOC106608780 coding downstream 536304 27449622 ~ 27453880 (-)
LOC110502517 LOC106607615 coding downstream 554342 27423892 ~ 27435842 (-)
LOC110502513 LOC106607606 coding downstream 680013 27252967 ~ 27310171 (-)
LOC110502532 NA coding upstream 122626 28115595 ~ 28120442 (-)
fam13c LOC106607716 coding upstream 146199 28139168 ~ 28148897 (-)
LOC110502533 mot9 coding upstream 188117 28181086 ~ 28197583 (-)
LOC110502534 LOC100380754 coding upstream 210975 28203944 ~ 28227097 (-)
LOC110502535 NA coding upstream 235569 28228538 ~ 28413165 (-)
G1850249 NA non-coding downstream 215782 27774132 ~ 27774402 (-)
G1850248 NA non-coding downstream 217934 27771213 ~ 27772250 (-)
G1850246 NA non-coding downstream 220731 27768955 ~ 27769453 (-)
G1850245 NA non-coding downstream 221518 27767804 ~ 27768666 (-)
G1849641 NA non-coding downstream 373207 27616567 ~ 27616977 (-)
G1850489 NA non-coding upstream 143595 28136564 ~ 28137101 (-)
G1850494 NA non-coding upstream 156646 28149615 ~ 28149901 (-)
G1850718 LOC106607826 non-coding upstream 471619 28464588 ~ 28466261 (-)
G1850764 NA non-coding upstream 594501 28587470 ~ 28587763 (-)
G1846858 NA other downstream 2549797 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 4644413 23344353 ~ 23358461 (-)
G1843946 NA other downstream 4756761 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 4771914 23213905 ~ 23218749 (-)
G1841959 NA other downstream 6618385 21345514 ~ 21371799 (-)
G1850441 NA other upstream 81956 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 931770 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 3158640 31151609 ~ 31239202 (-)
G1854905 NA other upstream 3224628 31217597 ~ 31218171 (-)
G1855326 NA other upstream 3987028 31979997 ~ 31981333 (-)

Expression


Co-expression Network