G1850012


Basic Information

Item Value
gene id G1850012
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28228561 ~ 28230666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2117598
ATTTcttttgtttttaaattacatttttttaagaCGCTTGAAACACTGTGGTGGCGTCATTGCTTCTATAGCCTCTAAAAGAAGACTTTGAATAACCAAAGTGCTAGAATAGTTACATTTCAATGGCTTCACTCTGTTAGTAAGAATTGTACATCGAAAAAATTTGCTCAGTTGAAAACACATATCAAACAAAATTGACAAAATTGATAGTTCAACCATATCAAATTACCCTCTACCCCCTGATTGACATGTAAGATAGGATATATGATACAATACCCTAAATTGCTTCACTTGTCAAAAGAAATGAAGTCCTTTACATGGTTGTCATGTCCACAGCATAAACATCATCACACTAAGTCTGAGCCTTCACACCAGAATAACACCACACTTGAACTACATGGGCCTCTAGTCTAACCAATACAAAGAGAAGATCTAATGCAAAGTAATCGCCAATGAGCTATCAAAACAATGCTAGTTAGACACTGCATACAGATTCTCAAGCCTAAAAAGATCACACAATTTCAGAGTTCAACACAATGTATTTTATGCTTAAATAATCGTTTTGACCATCCAGTGTTTTTGTCATACATATGCTATCAAGAGTTACAATCAAAGAATGCCTTGTGTGTCTTTATGTGAGTAGATTAAACTTTCTTCATACTGTTCCTCGTCCGAGACAAAAAAACACTtatggtttttatttttttttctaatttcaaatataaaactGGTGACAAATGTTAAGGCTATAGTTGTACACAGATAAAGGGTTTTAATTCTAATTTTAATACAGTGTTTTCAAACTTGTACAAATTTTACTTAAAATAATGTGAAAGGCATGCATGAAAATATGAGTACTCTGAAAGACTGTTTTTGCAGAATTAGATACATCCCCATTTTGGGAATCACTGAAATTTGCAGAAGATTTTCTGGAAATTTCCTCTGTTAAAATCAAACCAGCTTTTTTCATATACAAATGTTATACCTGCTATAATAATTCATTATACAACTTGTAAAGTTCTCTCCTCTGCATTATCATCTTGTAACTGATCATTTTAGAATTGTACAGATTGTAATTTCTATACAGAAAAAAGTCTTGTTATTTTCAGGTTTATAAAGGAAAACAAAAACCCCAGCAATTTACAACCTGACATTTATGGGTCCAAGAAAAAAAATATAAGGCGAGTGTTGGAGGTGGATCAGACGTGATCCTCTTGTTTTTGTGTAATTTTGTTGAGTTTCTTTCTCCTACTACTAGAATTGAGCTTTTGTGCCATCTTTGGTCACAGGGAAGTGTATGTTCAGTTGCACCTGTGGTTTTCCTGTAATGGAGTCCTTTTTCGGTCTCACCACAATGATCCTCAAAAGCTCTCAAGACACCAATGTTTTTTTCTCATGACCACTTGTAGTTTTTCTGTAATGGAGTCCTTTTTCAGTGTCACCACAATGCTCCTCAAAAGCTCTCATGACACCAATGGCACATTACGAATCACAAACAGGAAGCATAATTCTTCTGGTCCATAGACCACAGGAAGTGAGAGCTGTACAATTAGAATTCAGATTCCAtggtgagaaccttccagatccCTCAATTGACAGGGAGTGAGTTTTTCATGCTCATGCTAAAATCAGACGGGTCAAGTTCTTCACGCTTGAAAACCACACGTTGGAAGTATTGGCTGAAATGTCCTATTTTCCTTTAGTTGCTAGTTGTGTGTAACTTTCTGCCGTGGAAACCGATGAGAATAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2117598 True 1751 lncRNA 0.35 3 28228561 28230666

Neighbor

gene id symbol gene type direction distance location
LOC110502531 LOC106607719 coding upstream 87888 28098447 ~ 28140673 (+)
LOC110502528 bic1a coding upstream 150307 28001291 ~ 28078254 (+)
LOC110502527 LOC106607701 coding upstream 235372 27990245 ~ 27993189 (+)
LOC110503097 LOC106577081 coding upstream 388222 27790759 ~ 27848517 (+)
LOC110502523 LOC106607673 coding upstream 459501 27765818 ~ 27769060 (+)
LOC110502539 LOC106607826 coding downstream 231789 28462455 ~ 28466290 (+)
LOC110502541 LOC106607837 coding downstream 266910 28497576 ~ 28571528 (+)
LOC110502542 LOC106607841 coding downstream 367247 28597913 ~ 28603119 (+)
LOC110502543 LOC106607859 coding downstream 387841 28618507 ~ 28621114 (+)
LOC110502544 LOC106607864 coding downstream 403380 28634046 ~ 28652668 (+)
G1849835 NA non-coding upstream 321419 27895129 ~ 27907142 (+)
G1849821 NA non-coding upstream 352379 27874444 ~ 27876182 (+)
G1849658 NA non-coding upstream 456353 27771919 ~ 27772208 (+)
G1849660 NA non-coding upstream 458055 27770035 ~ 27770506 (+)
G1850667 NA non-coding downstream 230581 28461247 ~ 28461479 (+)
G1850669 NA non-coding downstream 236628 28467294 ~ 28467615 (+)
G1850688 NA non-coding downstream 263869 28494535 ~ 28494738 (+)
G1850690 NA non-coding downstream 340941 28571607 ~ 28571947 (+)
G1850763 NA non-coding downstream 357061 28587727 ~ 28587965 (+)
G1849208 LOC106607606 other upstream 952302 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3874315 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4882072 23345044 ~ 23346489 (+)
G1851386 NA other downstream 812695 29043361 ~ 29075998 (+)
G1852590 NA other downstream 1787824 30018490 ~ 30025046 (+)
LOC110502560 LOC106607954 other downstream 2316458 30547124 ~ 30659333 (+)
G1853092 NA other downstream 2574884 30805550 ~ 30806454 (+)

Expression


Co-expression Network