G1850718 (LOC106607826)


Basic Information

Item Value
gene id G1850718
gene name LOC106607826
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28464588 ~ 28466261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2118379
ATTTATTGAAAATACTGTCACTTTAGATCCAaactttttgtttttttacataaaaGTTATTTACAGAATAGTTATTCATATTAGATAGAAAAAGGACAAACAAAGAAAGAACAAAGAtacaaaaaaatctaattaaCAAATTCAATAGACATCCATAATTGCACTCTTTTTCAGGCCCTTTGAGTAGAGCCATGTGACATTTACATCGTGACCGTGCTGGCAGGTAGAGTGGTTTTGTCCAGGTCGTCAAAGTATGGATGGCTCATAGCCTGTCTAGCAGAGATCCTCTTGGGTGGGTCATAGATCAGCGTTTTAGCGAGCAGATCAATGCCATCCTTATCTAGGTTTTTCACCATGGAGGACAGATTCCCTGATTTCCACTTGGGGAACGTGTTCTTGTAGTCAGGCAGAGATTCTACCTCTGGCCAGATGTCATTGTTGGGAGTACCAAGGGCCctgAAGATCCTGAAGAGCTGGTCAATCTCTGAGTCTCCATGGAAAAGTGGTTTCTTTGTGGCCAACTCCGCAAAGATGGTCCCGATACTCCAGACATCCACAGGGGTGGAGTACCGTGCGGCACCTAGCAGAACCTCAGGAGCCCTGTACCACAGTGTCACAACTCGTGGGTATATACCCGGACTGGCACCCCGAAGGCCCTGGCCAACCCAAAGTCTGCCAGTTTGATCACTCCCTTGTTGTCAATCAGCAGGTTCTGGGGCTTCAGGTCTCTGTGGAGGACCCTTCTACAGTGGCAGAACAGGATGCCCTCTAAGATCTGGTACAGATAGCTCTGGATGGGGGAGATAGTAGCAGAGGGTTAAAATTCACCTACTGACAAGAAACA

Function

NR:

description
cyclin-dependent kinase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2118379 True 844 lncRNA 0.46 4 28464588 28466261

Neighbor

gene id symbol gene type direction distance location
LOC110502535 NA coding downstream 51423 28228538 ~ 28413165 (-)
LOC118943855 NA coding downstream 72293 28391640 ~ 28392295 (-)
LOC110502534 LOC100380754 coding downstream 237491 28203944 ~ 28227097 (-)
LOC110502533 mot9 coding downstream 267005 28181086 ~ 28197583 (-)
fam13c LOC106607716 coding downstream 315691 28139168 ~ 28148897 (-)
LOC110503098 NA coding upstream 6044 28472305 ~ 28480296 (-)
LOC110503099 LOC106607870 coding upstream 157112 28623373 ~ 28629070 (-)
LOC110502547 LOC106607910 coding upstream 217178 28683439 ~ 28686654 (-)
LOC110502548 LOC106607892 coding upstream 221753 28688014 ~ 28693649 (-)
LOC110503100 hecd2 coding upstream 392917 28859178 ~ 28878427 (-)
G1850494 NA non-coding downstream 314687 28149615 ~ 28149901 (-)
G1850489 NA non-coding downstream 327487 28136564 ~ 28137101 (-)
LOC110502532 NA non-coding downstream 344146 28115595 ~ 28120442 (-)
G1850380 LOC106607701 non-coding downstream 471619 27990184 ~ 27992969 (-)
G1850249 NA non-coding downstream 690186 27774132 ~ 27774402 (-)
G1850764 NA non-coding upstream 121209 28587470 ~ 28587763 (-)
G1850766 NA non-coding upstream 123177 28589438 ~ 28589658 (-)
G1850778 NA non-coding upstream 127037 28593298 ~ 28593712 (-)
G1850944 NA non-coding upstream 185483 28651744 ~ 28652420 (-)
G1850955 NA non-coding upstream 210850 28677111 ~ 28677357 (-)
G1850441 NA other downstream 386337 28074925 ~ 28078251 (-)
G1846858 NA other downstream 3024201 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 5118817 23344353 ~ 23358461 (-)
G1843946 NA other downstream 5231165 23182987 ~ 23233423 (-)
LOC110502553 NA other upstream 458478 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 2685348 31151609 ~ 31239202 (-)
G1854905 NA other upstream 2751336 31217597 ~ 31218171 (-)
G1855326 NA other upstream 3513736 31979997 ~ 31981333 (-)
G1855821 NA other upstream 4048805 32515066 ~ 32515408 (-)

Expression


Co-expression Network