XLOC_037670 (cryba2b)


Basic Information

Item Value
gene id XLOC_037670
gene name cryba2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11554089 ~ 11560432 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073968
ACAAGCGTGGTGATCGACAGCAGCCATGAATCCGCAGGAGCAGTTGGAGCAGAGGGGAAAGTTTCGGATGACTGTGTTCGAGGAGGAGCATTTCCAGGGCAAGAGCTGCGAATTCTCCTTCGAGTGCCAGAACATTCTGGAAAGAGACTTCAGGAAGATCCGCTCCATTAAGGTGGAGAACGGACCCTGGGTGGGGTACGAGTATCCTGAGTTCCAGGGCCAGCAGTTTATCCTGGAGAAAGGAGACTATCCCTGTTACCAGGCCTGGAGCGGCAACAGCAGCTACAGAACAGAGCATATGCTCTCTTTCAGACCCATTAAATGTGCTAACCACAGCGACAGTAAGATAACCCTCTATGAGTGTGAAGACTTCATGGGCCGTAAATTTGAGATGTGTGAGGACTACCCTTCCATTCAAGCCATGGGCTGGTGCAGCAAGGAGGTTCCCTCAATCAAAGTCAACTCTGGAGCCTGGGTAGGCTATCAGTTTCCCGGTTATCGTGGATATCAGTACATCTTCGAGAGAGACAGACATGAAGGAGAGTACAGATGCTACAATGACTTCGGCACCCAGGCACACACCAACCAGATCCAGTCCATGCGCAGAATTCAGCAATAAGAGAACAATATGTCATGCCGTATCAATACTATAGGCAATAAAGACATTTAAATGCTTGTGGCAGTTccttgctttttaaataaaacagcttTTCTGCTCAAATTGTGTATCTGTAAGTTGTGATTCTTGACAAATGAAACAGATCCTACGCTTTTATTTAAGCTGCATGAATAACTCGAGGAAGCCTTTGACAATTCAAGGCAAATGAAATACGCCGCTCTACTGATATTGAATATTTAGGATGTTTTACACCATCTGAAATCTGCTTAAATATTTCTTACACATTCTATTTGAGAGATGTGAgactgaaatatttttaataaacaagagCATGAATATGTGTTCTTTGTGAATCAGGTTCATTAATTTCAG
>TCONS_00073969
CTGCTGCTGAGTGAGCAGGCCTGATGCGCATTCGCCACTGAATGAGGACCGCTGTGCTATAAAAACACTGGACAAGGGCTTGGCCACCACATTGATTATACTGGATCTGTCCCACCTCAACAAGCGTGGTGATCGACAGCAGCCATGAATCCGCAGGAGCAGTTGGAGCAGAGGGGAAAGTTTCGGATGACTGTGTTCGAGGAGGAGCATTTCCAGGGCAAGAGCTGCGAATTCTCCTTCGAGTGCCAGAACATTCTGGAAAGAGACTTCAGGAAGATCCGCTCCATTAAGGTGGAGAACGGACCCTGGGTGGGGTACGAGTATCCTGAGTTCCAGGGCCAGCAGTTTATCCTGGAGAAAGGAGACTATCCCTGTTACCAGGCCTGGAGCGGCAACAGCAGCTACAGAACAGAGCATATGCTCTCTTTCAGACCCATTAAATGTGCTAACCACAGCGACAGTAAGATAACCCTCTATGAGTGTGAAGACTTCATGGGCCGTAAATTTGAGATGTGTGAGGACTACCCTTCCATTCAAGCCATGGGCTGGTGCAGCAAGGAGGTTCCCTCAATCAAAGTCAACTCTGGAGCCTGGGTAGGCTATCAGTTTCCCGGTTATCGTGGATATCAGTACATCTTCGAGAGAGACAGACATGAAGGAGAGTACAGATGCTACAATGACTTCGGCACCCAGGCACACACCAACCAGATCCAGTCCATGCGCAGAATTCAGCAATAAGAGAACAATATGTCATGCCGTATCAATACTATAGGCAATAAAGACATTTAAATGCTTGTGGCAGTTccttgctttttaaataaaacagcttTTCTGCTCAAA
>TCONS_00073970
GTGGGCTGCTGCTGAGTGAGCAGGCCTGATGCGCATTCGCCACTGAATGAGGACCGCTGTGCTATAAAAACACTGGACAAGGGCTTGGCCACCACATTGATTATACTGGATCTGTCCCACCTCAGTACACAAGCGTGGTGATCGACAGCAGCCATGAATCCGCAGGAGCAGTTGGAGCAGAGGGGAAAGTTTCGGATGACTGTGTTCGAGGAGGAGCATTTCCAGGGCAAGAGCTGCGAATTCTCCTTCGAGTGCCAGAACATTCTGGAAAGAGACTTCAGGAAGATCCGCTCCATTAAGGTGGAGAACGGACCCTGGGTGGGGTACGAGTATCCTGAGTTCCAGGGCCAGCAGTTTATCCTGGAGAAAGGAGACTATCCCTGTTACCAGGCCTGGAGCGGCAACAGCAGCTACAGAACAGAGCATATGCTCTCTTTCAGACCCATTAAATGTGCTAACCACAGCGACAGTAAGATAACCCTCTATGAGTGTGAAGACTTCATGGGCCGTAAATTTGAGATGTGTGAGGACTACCCTTCCATTCAAGCCATGGGCTGGTGCAGCAAGGAGGTTCCCTCAATCAAAGTCAACTCTGGAGCCTGGGTAGGCTATCAGTTTCCCGGTTATCGTGGATATCAGTACATCTTCGAGAGAGACAGACATGAAGGAGAGTACAGATGCTACAATGACTTCGGCACCCAGGCACACACCAACCAGATCCAGTCCATGCGCAGAATTCAGCAATAAGAGAACAATATGTCATGCCGTATCAATACTATAGGCAATAAAGACATTTAAATGCT
>TCONS_00073971
CAAGCGTGGTGATCGACAGCAGCCATGAATCCGCAGGAGCAGTTGGAGCAGAGGGGAAAGTTTCGGATGACTGTGTTCGAGGAGGAGCATTTCCAGGGCAAGAGCTGCGAATTCTCCTTCGAGTGCCAGAACATTCTGGAAAGAGACTTCAGGAAGATCCGCTCCATTAAGGTGGAGAACGGACCCTGGGTGGGGTACGAGTATCCTGAGTTCCAGGGCCAGCAGTTTATCCTGGAGAAAGGAGACTATCCCTGTTACCAGGCCTGGAGCGGCAACAGCAGCTACAGAACAGAGCATATGCTCTCTTTCAGACCCATTAAATGTGCTAACCACAGCGACAGTAAGATAACCCTCTATGAGTGTGAAGACTTCATGGGCCGTAAATTTGAGATGTGTGAGGACTACCCTTCCATTCAAGCCATGGGCTGGTGCAGCAAGGAGGTTCCCTCAATCAAAGTCAACTCTGGAGCGTAAGTCACTTCCCCAGCCTTTCTGAACACATTCTATATGCTATTATATTATAAGTAACTAAATATTAGTTTATAGTATAAGGTAAACTATTTAttgaaagtataaataaataaataaataaataaataaataaataaatattatagttgTTTGtctatgtgtttgagtaaaatgtatatatttttaaattctgtaaactactgatgaccCTTATtccaaatttaattaaatttttttatttgca
>TCONS_00073972
ACATTGATTATACTGGATCTGTCCCACCTCAACAAGCGTGGTGATCGACAGCAGCCATGAATCCGCAGGAGCAGTTGGAGCAGAGGGGAAAGTTTCGGATGACTGTGTTCGAGGAGGAGCATTTCCAGGGCAAGAGCTGCGAATTCTCCTTCGAGTGCCAGAACATTCTGGAAAGAGACTTCAGGAAGATCCGCTCCATTAAGGTGGAGAACGGACCCTGGGTGGGGTACGAGTATCCTGAGTTCCAGGGCCAGCAGTTTATCCTGGAGAAAGGAGACTATCCCTGTTACCAGGCCTGGAGCGGCAACAGCAGCTACAGAACAGAGCATATGCTCTCTTTCAGACCCATTAAATGTGCTGTAAGTTTGCACAGGCAACATTATGTCAAATCTAAATTGATCTCAGGGTAATTCATACCAAGAACCGTAATTATCATGGTGACTATACAACTGTTAAAGGGAGAGTTTGCCTAAaatctccacttgttccaaacctgtttctttcttctgctaaatacaaaagtagatcatttaaagaaagcggaaagccggtaaccattgacttccatagtatttttttcctactatggatgttaatggctACTGGATTCCAACataattcaaaatatcttcttatgtcttcaacagagaaaaaatatattcattaagaGGTAATATTTGGGTCCATATGAGCGTGATTAAATTatgcatatatttaaatttttgggtaaactatgtcCCAATCTGAATCTACTTTTTAATTCTGACATAATGTGTCACGGTTTTGGGAATAAATGATCTATAGcagatgtaaaaacaaacaacaaagcaTGCAAAACATACTTTCTGTGTTTT

Function

symbol description
cryba2b Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 42. Orthologous to human CRYBA2 (crystallin beta A2).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-324 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 42. Orthologous to human CRYBA2 (crystallin beta A2).

Ensembl:

ensembl_id ENSDARG00000041925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073968 False 991 mRNA 0.44 4 11554089 11560110
TCONS_00073969 False 840 mRNA 0.49 5 11554359 11560427
TCONS_00073970 False 803 mRNA 0.50 5 11554405 11560432
TCONS_00073971 False 715 lncRNA 0.41 3 11555076 11560109
TCONS_00073972 True 854 lncRNA 0.40 3 11557206 11560339

Neighbor

gene id symbol gene type direction distance location
XLOC_037669 fev coding downstream 2385 11548233 ~ 11551704 (-)
XLOC_037668 chpfa coding downstream 290861 11245962 ~ 11263228 (-)
XLOC_037667 BX000444.1 coding downstream 707540 10845918 ~ 10846549 (-)
XLOC_037666 si:ch1073-416j23.1 coding downstream 748858 10781687 ~ 10805231 (-)
XLOC_037665 CABZ01053619.1 coding downstream 775474 10778227 ~ 10778615 (-)
XLOC_037671 NA coding upstream 10880 11571312 ~ 11572354 (-)
XLOC_037672 umps coding upstream 16070 11576502 ~ 11587070 (-)
XLOC_037673 NA coding upstream 35555 11595987 ~ 11655031 (-)
XLOC_037674 zc3h15 coding upstream 104365 11664797 ~ 11676491 (-)
XLOC_037675 NA coding upstream 261947 11822379 ~ 11855305 (-)
XLOC_037663 NA non-coding downstream 1183464 10368380 ~ 10370625 (-)
XLOC_037651 AL954142.4 non-coding downstream 2183223 9355372 ~ 9370866 (-)
XLOC_037649 NA non-coding downstream 2265019 9286419 ~ 9289070 (-)
XLOC_037645 NA non-coding downstream 2503574 9026383 ~ 9050515 (-)
XLOC_037677 NA non-coding upstream 516411 12076843 ~ 12171785 (-)
XLOC_037688 NA non-coding upstream 1329466 12889898 ~ 12903013 (-)

Expression


Co-expression Network