G1851089


Basic Information

Item Value
gene id G1851089
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28821474 ~ 28826741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2118791
GGTTTGCACAATATTTTATTTCTAAAAGTATCACATGCACTTTAAACACACATTCAAGTGCACACTGAGATGCATACCTTTTTTCACAGTAATTAAATAGTGTACATACATATTTCAGACTCATGCTCACGTCAGCCACACCACTTCTCAACACTCACACCAAAATTGCTCTTAAAGAAATTAGAAAAACAATCATATAGCCCAGTTAAACTTTGAATAGATCCACAACAAGGCACAGTTCTGTAATACTGACCGAACAgtatcggtgtcccttccacgggactgTTTAGCTaccgtaggctaatgcgattagcatgaggttataAGTAACAAGTAAATTTCACAGGACATAGACAtttctgatattggcagaaagcttgaattattgttaatctaactgcactgtcgaatttacagtagccattacagtgaaataataccatgctattgtttgaggagggtgcacaattttgaacatgaaaagttattaataaacaaattacgcacatttgggcagtcttgatacaacattctgaacagaaatgcaatggttcatgggatcagtctaaaacgttgcacatacactgctgccatccagtggccaaaatcaaaattgcatctgggctggaataatacattattgcctttctcttgcattttaaagatgatggtaAAAACAGACGGTTGTTTTTATCTTTGAattttcttttaccagatctattgtgttatattctcctacattaatttcacataaATAATTCAAATCTCTTATCCATGATAAATTATCAAAGTTTTTGAATGAAGGGGAAATATCATCCATTATCTCAGACTTAGGAAAATATTGGAGAGAAAGGCGTTAAGTTCTGGATTCAGCCCCACCTGTTTTTCAAACATTTCTATAGGTTTGCATAATTAGGAACCATAGTGCTGCCTATCGTTGTTCTTTTGGTCTGGAAGAAAAAGTATCCTCTGAAGAGAAAATAGTTTAAGGTTAGTACCAGTTCAGTCAAGTCCACAATACACAGAATATTATTTTCTGGTATATGGTCCACAGATTTCACAAAATTAATCAAATCAATAGAGTCTCGGGTATACGTGGGGAGAGAGATCACCCAGGGATTCACAAAATGGTGAAACCCTGGGACCCAGAAAGAACTCTTGGAATCCCATGCCTATCTAAAATCTATGAATGAGCACGTTCCTTTCACCATTAACTATGACCTATCCCAAATCAGTTTTCTTGATGTCATGGTTATTAAGGACAAAACCTCCCTCTCTGCAGATCTCAATAGGAAACATATGGACAGGAATACCCTCCTTAGAGGTGACAGCTTCCCTCCAGGTCCATTTATTAAGTCAATTCAGCCGCATCAGAAGAATATGCAGCTCTGATGCTTCTTACCAGAAACAGACCACTGACTTCACACGAAGGTTTAAGGAAAGGGGGTACAAAGACAATTGGGTAAAACATGCCAATGTTTTGAAGGGCTAACACAGTTGGAAAGCCTTCAACCAAAAGGAAAAGAAAAAGCAGAACGTGTCCCCTCATGCTTCACCCAATACTCACAATTGGGGAAGGCATTTAAGGACAATATCAAAAAGTAGTGGTACATTATTGATACTGACCCACAATTGAAACCCATCTATAAATAACCCCCGCATATGGTCTTTAAAGACCCCTAAACGTGTGAGACATTGTGGTCAAATCTGAATATCCACAGAGAAAAGGAATATTGTGTAGataaaaactcagcaaaaaaaataaacgtcctctcactgtcaactgcattaattttcagcaaatttaacatgtgtaaatatttgtatgaaaataagattcaaaaactgagacgtaaactgaacaagttccacagacgtgtgactaacagaaatggaataacgtGTTTCTGAACAAAGGGGACGTCAAAATCAAaagcaacagtcagtatctggtgtggccaccagctgtattaagtactgcaatgcatctcctcctcatggactgcaccagattatCCAGTTGTCacaccactcttccaccaaggcacctgcaagatgcaggacatttctggggggaatggccctagttccaacaggtcccagacgtgctgaacgggattgagatccaggctcttcgcttgccatggcagaacactgacattcctgtcttgcaggaaatcttgcacagaacgagcagtatggatggtggcattgtcatgctggagggtcatgtcaggatgagtctgcagtaagggtaccacatgagggaggaggatgtcttccctgtaacgcacagcgttgagattgcctgcaatgacaacaagctcagtctgatgatgctgtgacacaccgccccagaccatgatggaccctccacctccaaatcgatcccactcaagagtacaggtctcggtgtaacgctcattccttcaataaTGAACGCGAATCCgcccatcacccctggtgagacaaaactgcgactcgtcagtgaataGCACTTTTTGCCAGCCCTGTCTgttccagtgacggtgggtttgtgcccataggcaatgttgttgccggtgatgtctggtgaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggagggattgtgcattcctggtgtatctcaggcagttgttgttgccatcctgtacctgtcctgcaggtgtgatgttcggaagtaccgatcctgtgcaggtgttgttacacatggtctgccactgcgaggatgatcagctgtccgtcctgtctccttgtagcgcTGCCTTAGGTGTtttacagtacggacattgcaatgtattgccctggccaaatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcactcagatgagcagggaccctagacatctttattttggtgtttttcagagtcagtagaaaggcctctttagtttcctaagttttcataactgtgaactaaattgcctaccgtctgtaagctgttagtgtcttttAACGACCGTTCAACAGGTGCATGTtccttaattgtttatggttcattgaaaaagcatgggaaacagtgtttaaacactttacaatgaagatctttgaagttatttggatttttatgaattatctttgaaagacaggatcctcttgaaaaagggacgtttctttctttgctgagtttatattaccGTAAATATTGATCACATTCCTTGCGTATGGTcatatattttgatacattgaatgTTGATATTGGGAACCTaagttatatatttttacctgctGTTTCAGGAGGTGATGTCACCGAGTACTGCCCCTATTTATACGACCTTCCACCAACACCTGGGCtatggatgcctgatgaagaACTAAGGGTTGAAATGTTGTTATAATAAAatcacctgggagcatgagcagcagtgtgcagCATTTTATAATTTGTATGATTTACTATTAAATCTCACATAAATTCATATTTGATTGAATTACGTTTATTTTTCCCCCCAGATGGATGGTACCAGTCTAACCCTTCAATGTGAAGGACATCCTATTGGTACCAATCTCACCACATACTCTATGCATAGAAATCAGGATGTTCATCTGTCAGTGCATATGCTTACGGTAGGTTCCAACTGTGAAAATGGGCTTATGTCTGGTTACAGATTGTCAAAATTAAGTTTCAATGGGCTTTTGTTTTATAACAGGCACAATATTGATAAGGCACTAAACTGCTTTACACAAGAATCacatgtcaaataaaataaaatcaattgCCTCTGATCATATTTAGAAAGTGTCTCAATGGTAACCAAATAGTAGTAGAATCTAGCCATGGTCCATATTTCCATATACTTTTTCTTTCTTGATATGCTTCATTGCATTCAAAGCAGCTATTGACATTTTAATATACAGTAAGTTAtgtcactactactgctacagatgtaggatcttaatttgatcaccctgttgcaggataactgTCCTGCAATGCAGTAActttaaaacttgtagtgtatttgaggtttaaaaaagaCAAAAGTTTATCATTTCCGCTTagacatttcagatttgattttccCTTATGACAAATGGACCAACTCCtagaaaaatgtccattaattataatccacatactagttcacatttcctgttggtacattattattttcctgctgtagcaatcTGGCtctaattaagatcctacatctatatcACCCTGCTCCATCCAAGTCCATCCCTGTTATACCTCTTCAGTTGCTATTTCACCCCAGATGAACGTCTTTCCTAATTTCACCAGTAGTTGGCACCATTCTCAATTCTGCCCAAGCTTTGCCACCCAGGAAAGAGTCCACTTGATAAACGGGGACTTCCAAACTGGTCAAACTCCATCTCCAGTAGTTTATTACCATTGTTGTGCTCTGCTGGTTTCTTATGCTCAACAATGGTTTTGGCCAGTGTTTGCACATCCTCTCCATTCCACCCAATGGGTTTGAGCATGTAGTTTTCCCCATCATTATTGTCCCAGAAAACCTGGTCTTTGCTCTTGAAACATATGCAAAATTCAACTTTATTATAAGGATGCACGTAACTTGGCAGATCGAAGACAAAGGTGAATGTATCTGTGTCCTGGCAACTGTAGACTTTGTTTATGAAGGTGCAGTCAATGTCTGTGTGGGTTTTCCATGAGTCAACGGTCAACCGGACCCGGACAGATTTCTCAAAGCCAAGGTTTCGGACTTTCACAGTGCCTGTGAGTGACCTCTCCTGCAGTGTGCAGTTTTCCAGGCACACAGAGTCCTTCAACAGACGGTTCCGGAAGGCCAGATAGTCTGCAGCGGGTTGGGGGAAGTCCAGCACCAGGCTTCGCATGGTGCTGATCTTCAGCTGCATGTTGGCATTCTCCAGGTCTGTAAGGTCAAATTGTAAGTCGGAGAGCACAGGCTTTTCATCGAACTTTGAAAAGACGTGGATGGCTGTGAGGGACATGCCTTTGGAGTCGGCAAAGACCACTTTCTTCTTGCCTTTGGGGATCTTTATGGTGGTCTTGGGGCTCTTCCGGGCCTCCAAGGGCCTTTGGGAGCTAATGCAGGGCCGGAGGGGCTTGTAGTGGTTTTCCCGGTTCTTGACCCTCAAGTTCTCATAGGAGCTGAGGAAGCTCCAGAGAGGTGGAGAGTGTGTGATGTACATCTGCATAGCAATATCTACAGG

Function

NR:

description
protein phosphatase 1 regulatory subunit 3C-B-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2118791 True 5243 lncRNA 0.42 2 28821474 28826741

Neighbor

gene id symbol gene type direction distance location
LOC110502548 LOC106607892 coding downstream 127825 28688014 ~ 28693649 (-)
LOC110502547 LOC106607910 coding downstream 134820 28683439 ~ 28686654 (-)
LOC110503099 LOC106607870 coding downstream 192404 28623373 ~ 28629070 (-)
LOC110503098 NA coding downstream 341178 28472305 ~ 28480296 (-)
LOC118943855 NA coding downstream 429179 28391640 ~ 28392295 (-)
LOC110503100 hecd2 coding upstream 32437 28859178 ~ 28878427 (-)
LOC110502553 NA coding upstream 93943 28919846 ~ 28932600 (-)
LOC110503060 NA coding upstream 142426 28969160 ~ 28981892 (-)
LOC110502554 LOC106607935 coding upstream 294305 29121046 ~ 29632760 (-)
LOC110528531 NA coding upstream 913814 29740555 ~ 29746968 (-)
G1851020 NA non-coding downstream 40804 28780384 ~ 28780670 (-)
G1850955 NA non-coding downstream 144117 28677111 ~ 28677357 (-)
G1850944 NA non-coding downstream 169054 28651744 ~ 28652420 (-)
G1850778 NA non-coding downstream 227762 28593298 ~ 28593712 (-)
G1850766 NA non-coding downstream 231816 28589438 ~ 28589658 (-)
G1851260 NA non-coding upstream 96681 28923422 ~ 28923668 (-)
G1851262 NA non-coding upstream 97421 28924162 ~ 28924383 (-)
G1851273 NA non-coding upstream 115973 28942714 ~ 28943017 (-)
G1851276 NA non-coding upstream 120371 28947112 ~ 28947406 (-)
G1850441 NA other downstream 743223 28074925 ~ 28078251 (-)
G1846858 NA other downstream 3381087 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 5475703 23344353 ~ 23358461 (-)
G1843946 NA other downstream 5588051 23182987 ~ 23233423 (-)
LOC110502574 LOC106608078 other upstream 2324868 31151609 ~ 31239202 (-)
G1854905 NA other upstream 2390856 31217597 ~ 31218171 (-)
G1855326 NA other upstream 3153256 31979997 ~ 31981333 (-)
G1855821 NA other upstream 3688325 32515066 ~ 32515408 (-)

Expression


Co-expression Network