XLOC_037677


Basic Information

Item Value
gene id XLOC_037677
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12076843 ~ 12171785 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075302
CGGTGACGTTCTTTCTTGcattgcatgttttatttttctcacAGTACTCTGGTTTATATATTAGTTGTTTTTATACTGAGTATGCGTCGCTGTGTTCATGATACTAAACTGATAGGATTTTTGGATTATTCGCTTGGATTAGACAACACACCTTATTTTATGGACATCTTCAAGTGTAAAGAAGCCACACGTCGTGTAGagaagGTTTTCTGAATTTCAAGACCTGCTGAAGACTTTTTTCTCAGCATCTTTTGCACATTTCAATGCGGGAGGCTTTTTTTGGAGCATGTGGGCAGGAGTCTGATGAAACATGGTTCTACAAGAGACATAAAGCAATGCAAAATCAAGtCTTGGCAAACTGACATCAGCACAACATTCAAGAGGGTGTGTGGACAATT
>TCONS_00075303
ACGTGTACGGTGACGTTCTTTCTTGcattgcatgttttatttttctcacAGTACTCTGGTTTATATATTAGTTGTTTTTATACTGAGTATGCGTCGCTGTGTTCATGATACTAAACTGATAGGATTTTTGGATTATTCGCTTGGATTAGACAACACACCTTATTTTATGGACATCTTCAAGTGTAAAGAAGCCACACGTCGTGTAGagaagAGCATGTGGGCAGGAGTCTGATGAAACATGGTTCTACAAGAGACATAAAGCAATGCAAAATCAAGtCTTGGCAAACTGACATCAGCACAACATTCAAGAGGGTGTGTGGACAATT
>TCONS_00074963
CGTTCTTTCTTGcattgcatgttttatttttctcacAGTACTCTGGTTTATATATTAGTTGTTTTTATACTGAGTATGCGTCGCTGTGTTCATGATACTAAACTGATAGGATTTTTGGATTATTCGCTTGGATTAGACAACACACCTTATTTTATGGACATCTTCAAGTGTAAAGAAGCCACACGTCGTGTAGagaagGTTTTCTGAATTTCAAGACCTGCTGAAGACTTTTTTCTCAGCATCTTTTGCACATTTCAATGCGGGAGGCTTTTTTTGGGTGAGCTGGTGCTAACGGCACAACTATGAATCATCATTTGAATCATCACGAATCTCATTCAGGTTAAATTTCCATTTTCATATCCTCTAATCTTACTTTAcatttcaaattatttaaaaa
>TCONS_00075304
TGCACGTGTACGGTGACGTTCTTTCTTGcattgcatgttttatttttctcacAGTACTCTGGTTTATATATTAGTTGTTTTTATACTGAGTATGCGTCGCTGTGTTCATGATACTAAACTGATAGGATTTTTGGATTATTCGCTTGGATTAGACAACACACCTTATTTTATGGACATCTTCAAGTGTAAAGAAGCCACACGTCGTGTAGagaagGTGATTAGACTTAGAAAGGATTTTGGAACAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075302 False 398 lncRNA 0.39 4 12076843 12171775
TCONS_00075303 False 326 lncRNA 0.39 3 12076843 12171782
TCONS_00074963 False 397 lncRNA 0.35 2 12143069 12171769
TCONS_00075304 True 246 lncRNA 0.37 2 12163937 12171785

Neighbor

gene id symbol gene type direction distance location
XLOC_037676 znf804a coding downstream 42399 11906770 ~ 12034444 (-)
XLOC_037675 NA coding downstream 221538 11822379 ~ 11855305 (-)
XLOC_037674 zc3h15 coding downstream 400352 11664797 ~ 11676491 (-)
XLOC_037673 NA coding downstream 421812 11595987 ~ 11655031 (-)
XLOC_037672 umps coding downstream 489773 11576502 ~ 11587070 (-)
XLOC_037678 nup35 coding upstream 87684 12259469 ~ 12401871 (-)
XLOC_037679 C1H3orf70 coding upstream 231504 12403289 ~ 12424794 (-)
XLOC_037680 ehhadh coding upstream 256441 12428226 ~ 12443726 (-)
XLOC_037681 igf2bp2a coding upstream 296715 12468500 ~ 12575776 (-)
XLOC_037682 tra2b coding upstream 407292 12579077 ~ 12595003 (-)
XLOC_037671 NA non-coding downstream 504489 11571312 ~ 11572354 (-)
XLOC_037667 BX000444.1 non-coding downstream 1230294 10845918 ~ 10846549 (-)
XLOC_037663 NA non-coding downstream 1706218 10368380 ~ 10370625 (-)
XLOC_037688 NA non-coding upstream 718113 12889898 ~ 12903013 (-)
XLOC_037689 NA non-coding upstream 773772 12945557 ~ 12948957 (-)
XLOC_037690 NA non-coding upstream 782782 12954567 ~ 12956248 (-)
XLOC_037691 NA non-coding upstream 925436 13097221 ~ 13120257 (-)
XLOC_037692 NA non-coding upstream 1074239 13246024 ~ 13246524 (-)

Expression


Co-expression Network