G1852590


Basic Information

Item Value
gene id G1852590
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 30018490 ~ 30025046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2120344
ACCAACATTGGCAACATGACACAAACTTCAACAAGAATAGTTCTACTTTGCTTTTGCTCACTGACAGGAAAGAAGGCAAGCCGTGATGGTGGTAGAAACTTAATTGAGCCTTCATGTTCATTATATGTGTTTGAGTTTATGGTAACAGTGTATTTAAACACAGTTGGCCTACATGTCGAGTATCAACCTGTACATCATCGCACTAATTCTTCAATCAGAAGAACAACTACACATAGGCAGAGACAAGGTTGAGACTGTTGTGTAATTCGGAATGTTTTTTGTGTCTCCCAGCTCTCCTCTCATGTGCTGTTGCTCAGGAGGAAGATGTTGGGAACAATAGCTGCTCCTCAACCACCTTGTTGTTTAAACAGCTCTCTACTCAGCTTGCAGTATGGATAACTTCATCACTGAAATTTGTCTAGAAACTGTTAAATCTGTGGTCAACTTTTACCAATAATGCAATGCTGATCAGTTGCTCTGGCTAAATCTAAATTGAAGTTGACATGTTTTGGTACTCGGATTTCAAACAGATGTATGACGTCTCTTTCGACTATCTGTCAACAGGAGGCAGCACAATGTGCTAAACATATTACTAGCCAGTGGAGCGACGACCAGACTGCTGTTGTGATTAACTCCTTACAAACACTGACAGTCATTCTACAGAAACATCAAAAAACAGTGCATATGAAGATATTAATGTACAGGCCAGTTCAGTCAGATTGACTGTACAATATGATACTGCAACTACAATCATTTCCACTAGAGttacagtcttgtcccatcgctgcaactcacgtaaggactcgggagaggcaaaggttgagagccatgcgaaACACGACCCCCGCaaagcagcactgcttcttgacacaatgctcgcttaacccggaagccagccacataaatgtgtcagaggaaacaccgtacacctggcgaccgtgtcagcctGCATGCCGCCcgggcccaccacaggagtcgctagagtgcgatgggacaagaacaacacggacggccaaaccctcccctaacccggacgacgctgggccaattgtgcaccacctcatGGGTTTCCCGTTCACCGccagctgcaacacagcctgAGATCAAACCGTCTGCACATGTTCTACAGTACGTTGTCTTTCAGATTGTTTGCTTTATCTGGTGGGTTGGCCTTCAAACATTTACCTGACAACAGACCTGGACTATAATATGTCCCAGTCCTTCTCACTCCCAATGGAGACCTCTCTTTTCTTCTTGCATGGACTCCATTTCTAAGACAGGAAGGAAAATACAGTACAAGGGGTCACCATAAAGCCTCAGGGTTGGCCAGAACAGTGCATGGTTAGTGTGGCATCAGGTTATAtaatgtaaataaatgattattTCATAAGCTAGCCATACCCAATGGAAAATACAAATACATATTAACAGAAACAGTGGCTCATTTACCTTTGTTTAAAGAGTTAACCTCCTCTAAGTTAGGTATCTCAGATTGGGTTTGGTTCTCAAACACAGTCTCCCATGAAAGGCAAACGGTACCATTCAGGTAtttacagtgaggcaaaaaaaattcagccaccaattgtgcaagttctcccacttaaaaatatgagaggcctgtaattttcatcataggtacacttcaggggggacctaatgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagctagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatatcaaatcaaaccaaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcaagggggtgggaACATCATGTTTTGGGactctgcaaagggaccaggacgactgatccgtataaaggaaagaatggatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaagcaacgaaggagtggttttgtaagaagcatttcaaggtcctagagtggcctagccagtctccagatctcaaccccatagaacatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttaacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccataatttgcaaataagttaaaattaaaaatcctacaatgtgattttctggattttgtttttaattttttctgtcatagttgaagtgtacctatgatgaaatttacagtcctctcatctttttaagtgggagaacttgcacatgtcacaccctggccttagtatttggtgttttctttattattatggttaggccagggtgtaacatgggtgattatgtgtttgtcttgtctaggggtttttgtagattgatggggttgtgttcagtgtagtattctaggtaagtctatggttgcctagagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgggtattttgtgggtgattgtttcctgtctctgtgttttgcaccagttagggttttccacattttcttattttgtatattgttcacg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2120344 True 2890 TUCP 0.43 3 30018490 30025046

Neighbor

gene id symbol gene type direction distance location
si:ch1073-126c3.2 NA coding upstream 22679 29993597 ~ 29995811 (+)
LOC118943859 NA coding upstream 401920 29613252 ~ 29616570 (+)
LOC110502556 NA coding upstream 883637 29131643 ~ 29134853 (+)
LOC110502552 tsn14 coding upstream 1101084 28901697 ~ 28917406 (+)
LOC110502551 LOC106607927 coding upstream 1194696 28818971 ~ 28823794 (+)
gfra1a rtgfra1 coding downstream 18481 30043527 ~ 30144813 (+)
LOC110502560 LOC106607954 coding downstream 559850 30547124 ~ 30659333 (+)
LOC110502563 LOC106607969 coding downstream 641498 30666544 ~ 30682724 (+)
LOC110502565 LOC106607988 coding downstream 703342 30728388 ~ 30816688 (+)
LOC110502570 rtn10 coding downstream 849764 30874810 ~ 30909320 (+)
G1852632 NA non-coding upstream 51069 29967213 ~ 29967421 (+)
G1852631 NA non-coding upstream 51358 29966859 ~ 29967132 (+)
G1852630 NA non-coding upstream 53307 29964886 ~ 29965183 (+)
G1852628 NA non-coding upstream 54045 29964221 ~ 29964445 (+)
G1852573 NA non-coding upstream 133857 29884415 ~ 29884633 (+)
G1853031 NA non-coding downstream 572389 30597435 ~ 30600086 (+)
G1853097 NA non-coding downstream 683707 30708753 ~ 30709917 (+)
G1853099 LOC106607983 non-coding downstream 690040 30715086 ~ 30716130 (+)
G1853156 NA non-coding downstream 793967 30819013 ~ 30819225 (+)
G1853161 NA non-coding downstream 800021 30825067 ~ 30825321 (+)
G1851386 NA other upstream 942492 29043361 ~ 29075998 (+)
LOC110502541 LOC106607837 other upstream 1493253 28497576 ~ 28571528 (+)
LOC110502528 bic1a other upstream 2012276 28001291 ~ 28078254 (+)
LOC110502527 LOC106607701 other upstream 2025527 27990245 ~ 27993189 (+)
G1849208 LOC106607606 other upstream 2742231 27274338 ~ 27276259 (+)
G1853092 NA other downstream 780504 30805550 ~ 30806454 (+)
G1853162 rps27a other downstream 801539 30826585 ~ 30834692 (+)
LOC110502584 LOC106608814 other downstream 1595371 31620398 ~ 31624184 (+)
morn2 morn2 other downstream 1842818 31866319 ~ 31869743 (+)

Expression


Co-expression Network