XLOC_037683 (tspearb)


Basic Information

Item Value
gene id XLOC_037683
gene name tspearb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12596038 ~ 12625385 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074002
GTGTGTTTATGATACGGCTCTTATATTATGGTGGCAGGTGTGTTTGTAGTAGTTTGCGTGCCGAGTTGCGGTACATTGTTGCTTATTTCTTACTTTGAAAATACCTGCTGCTAGCTTTAGGCAAAATTACACAACTCACTTGCATACTGAGGTCCAATAGAGAGATGCAAAATGTTTTGGTGCTGTTAGTTTTATATCAGCACTTTCAGAATTGTTAGCCAATCACATCCAACGGCTATCGTTATCAAATTAAAATCATGTTAACAATATTTTCTCCTAAACATTTCTATATCCTCTTGTTTCCCCACCAGCCAGACACATGAGGGTGTTGCTGAAGACATGGGTTGATGGGTTGAGATGCAGGTGAGGAAACGATTGACTGAAGGGAGATTTCCTTGACAAGCGCTCCTCGGGGTATAGTGCTCATCACAGCGATCGAAAAGAGCGATGCAGTTCACAACAAGAGCAACCCGACACACACATGTACAGCACTGGGGAATTCCTCAGGACACCTTTAAGACAAGAGATGAGAGCTGGAAAAAGCTTCTCTCTCCCTCCTGTGTGCTTCATTTGCTCCACCTATCCCTCTGTTTAAGGTCGACCCCTCCTTTCTCCAGCTGACTTATTCTCATTTAAATGTCTGCGGGGTAAAACACCTCTCCCTGCTCATAACTCACAGGTGAAGTTTACACTCCCCTTCACAGCGAGTGTACAGCAATGTACGACCGGCCTCCGTCCAAAGAGAAACTTCTTCACAGTTATGGAGACTCCTTTGAGCAACAGAAGTTTGGATTTTAATCAGTGCTTTGAATTCTTTGTTGTTTGATTATATGTTTGCTGAAATCATAAAACGGGACGGCAGAAGTGAATAAGATGTCCTTTCAATTACGAGTAAGGTCTTTTACCTGTGTGCGGATGTAAGGATGGTCTCTGGGCTTTGAGAATGGCATTGTTTCAGTCTGGCTGTGTGTGAATGGAGCTGAGAGAGTGGAGACCCTGATGTCGGAGCTGCCGCTGCTGGCCTGTGTGCTCCTGTCCTGGATCATCACCTGCCATTCTGGACCGTGGAGACCATGCACAGATCTGTTACCACTCGACCTCCTGTCCCGGGTGATTCCCATGGCCAGCAGGGTGCAGGATGGTATACGCATGGTCCAGTCCAGAGGTGCTCGAGGATTCCAGTTTTCTGGATCTCCACAGCTGTTCAGCTTCCCTTCCTCTCAGCTCTTTATTAACTGTCACATCTTTCCCACCGAATTCTCCATCATCGTCACATTCAAAATCCCACAAGTGGCTCCTGAGAAAAGTGAATACATATTTACAGTGTTGGAGGCGGATTCAGATGAGCTGCTTCTCGGCCTGCGTCTGTCCCATGATAAACTCCACTTCCTGCACAAGGGCCATGGGAGCAGGAAACGCATCACTTTTAAGGCAGTAGGGCTGGATGATGACCGCTGGCACACTTTGGTTTTAGCGGTGACGGGATGCTACACAATCCTCACTGTAGATTGTGGCACACCTCTTGAGCTGTTGCTTGAAAGGCCCTTCCCCGAAGATCTTGATACAGCTGGCTCCACATTCTTCATTGCCAGCAGAAGGAGATGGAATGGCTTATTTTCTGGTCTGATGCGACAGCTAGTTCTGTTGCCTGGTTCAGATGCTACCTCACAAATATGTCCCTCATCTGAGCCCCGGCTATCTGCACTCTCAATTCCCCAGACCCTCTTACACCTGCCAATCAAGCCATCGTCCACTGATCTTCCCCTCCATCCGTATGAGGCAGAGGTTCGGGTGACTGCGGGTGTGAGTCCGCCCTGTGGACACTCAGAGGAGGGACAACTGTGGTTCAACACGCTGAAAAAGGGACTGTTTCTCTGTGATGGCATGATGTGGCTCACAATGCTGCAAGAAAAAGAGAAGCTGGACTATGTGGAGGATCATCAGGATTTATACACTTACTCTGAGACATTTGACATAGAAGTTTTCCACATCCCTTCCGTTGGGCTTTTCATTGCGACCGCCAACCGAGACTCCAACCTTGGTTCAGGAAtatacaaatggatggatgggaggTTTGAACGATATCAGAACATCAGCACCTACGATGCACAGGCATGGCAGTACTTCACAGTGGGCAAGAAGAAGTTCCTGGTTGTGGCCAACTGCAAGAGTAAAGAAGCAGGAGAGCCCGAGCAGTCGGTGATTTATAAATGGAGCTCAAAGAAGCTGAAATTTATTCGCTACCAGACTCTGATCACACACAGCGCTCGCGACTGGGAGGCTTTCAACATTCAAGACGAAACTTTCCTGGCCGTGGCCAATCACAGGCAAGgGGAGAGAAACCACAATATTGATAGTGTAATCTACAAGTGGAACCAAGTTACCCAGTTTTTTGAGGTCAATCAGACAATCCCTACGGCTGGCGCGTATGACTGGGAGTTTTTCGCTGTCGGCCCTTATTACTTCCTTGTGGTGGCAAACACTTTCAATGGAAGATCTACAGTCATTGATTCTACAATCTATATCTGGCTGGGAGGGATGTTTCAGCCTTATCAGTCCATTACAACATTCGGGGCGATCGACTGGGAGATGTTCCAGATTGAAAATAGGGTTTTTCTGGCGGTGGCCAACAGCCAGATGCTGACGGAGGAGGGCAAGATCCTGTACTCCATCAACTCCACCATCTATGAGCTCAGCATGACATCACAGACCTTCGTCAGGTTTCAGGATATTGAAACAAACAGTGCTTTAGATTGGGAGTATTTTACTGTGGGAGATGACAAGTTCCTGGTGGTCGCCAACTCCTATGATGGAAACTCATACTCTCTTAATAGTGTTATATACAGATGGCAGGGTTACGAGGGCTTTGTCCCTGTCAACAGACTGAGCACCAATGGCTGCAGAGACTGGGAATTTTTCAACACAACCGACGGCTACTACCTCATCTACTCCAGTGCCAGAGCTGCTCTCTCTAAGGTCCTTAAATTAAGGACCATATAGTGGCACTGGACATATAAACAAAGACTAGCAGTAACTCTAAGCATGAACTGTAAATACGATGTTCTTGGATATAGCTGTTATCCAAAACTGAAATAATATTCATTTACCACATGCACTTAATGACATTCCTTGTAACAAGCTGAAGGATCTGTCTCACTACACTGAAAACATCCTGAACAACAACAGCACAATCGCAAAGAGACTATGGAAAAATTGAGAAAACTCACTTCAGAAGATTTCATACTCGCACTTATTTTGCACACAGTTCACCAGTACGCTTTGTTTAATAATATGTCATTATGTCCTGTGATCATCTGCACATAAAGGCAGCTAACTAGTTAGTTTATAAAATGACTGGAAAAGATCGATTTATCAGCCAACAAAACACTGTATTAACTGTACTGTACTGTTTGTAAGCTACCgacttttacatttgttttattagaagGTCTTTAAATGAAATTGAAGTATGTATAATTCTATAAATTCAGCTATAagtgaataatattaatagtaataaaaatgacTAAGGATTTTAATAATATACTGACTgttctttttaataatattaccTCTATAACTTATTTTAGAAGATAGTTGTGTTGATGGTTTCTTTATGAACagtgtttttgttcatttttctgctttgttttgaTTCTGTCATAATTGTGAGCTTGCTGTGGCATATAAGTTACAACATTTGCTTTACTAGTGACTTATTCGACAGCATAGCATtattttttgttgaattaaatatttttgtttagattttgttgtgtttattcAACGTTTGTCATCCAATGATAATATCCATTTTGTCTTGGGAACAAAAGCTGAAAGAGaaatgtaaaaaactgtaaatgacaGTATACTGCTTTATTGGTGTAAATAACAGattttacatttgttcatttattgtgTGATTGATAATATTTATGATGCCAATAACCATGCATTAAAATGAATTACACACAAATGTAATTTGTATATTAGGCGCCCTCTACTGGAAACTACTGTGATAAGATAAGACATggttatactttatttttttttaagtattccaAACGTTTGTGCATTTCTTTAGTTTTTGATTGCTCGAAAATGCTAACAatagttttcttttcttttttttttgtactttactAAGGAACAGTGGTGATTTATAGCTAATgattttaatcaataaataaaaagtaaataaaaaatctgcaaACTTAACTGAGGATTGTGGCTTTatttcagaaaaaatatatacagtgctcggcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacaaatctaTCACAAATGTATCACATATTTCAATAGAAAGCtccacaatattatatttgtgcatatacattagtcagtactgaagccaaatctggagcttatctaacaaaataatgtaTGATAATGGTGCAAAAacgagtacacccaaatttatataatatagaaaaatattaaattctaataaaaaatagaaaaactcaAGAGAGGCAAAAAATGTGAAAGTTTAGTTTTgcaaaaaatgtacaataattgtatttgttttggaatattttgcttgaatttaattgtataaacTTTGATgctattgtaataaatatatctgtttaataaatctgttttgtttaaatgcactaaaattcattgcctatattcactgagaaatggacacaaatattcattttcaaaatggggtgtactcaattatgccaaGCCTTGTTTAGACCCGGAACACCGTGAATTCATGTATGCTTCAACCGATATATTCATCCTTCTGGACATGTTTCAATCACCTCAGTCTGGCCTCTCTGAATTTATCatgaaaacttttcatttttacttttcattttctcACTTagattgttttgtcttgtttctggtccaaatatctacacATTCTTAAAttaggaagcattttctagaaaagcaaaaaaaaaaaaaaaacagtcttgttttaaaaaattatgtaaacattgagtttttc
>TCONS_00074003
GAGACTCCTTTGAGCAACAGAAGTTTGGATTTTAATCAGTGCTTTGAATTCTTTGTTGTTTGATTATATGTTTGCTGAAATCATAAAACGGGACGGCAGAAGTGAATAAGATGTCCTTTCAATTACGAGTAAGGTCTTTTACCTGTGTGCGGATGTAAGGATGGTCTCTGGGCTTTGAGAATGGCATTGTTTCAGTCTGGCTGTGTGTGAATGGAGCTGAGAGAGTGGAGACCCTGATGTCGGAGCTGCCGCTGCTGGCCTGTGTGCTCCTGTCCTGGATCATCACCTGCCATTCTGGACCGTGGAGACCATGCACAGATCTGTTACCACTCGACCTCCTGTCCCGGGTGATTCCCATGGCCAGCAGGGTGCAGGATGGTATACGCATGGTCCAGTCCAGAGGTGCTCGAGGATTCCAGTTTTCTGGATCTCCACAGCTGTTCAGCTTCCCTTCCTCTCAGCTCTTTATTAACTGTCACATCTTTCCCACCGAATTCTCCATCATCGTCACATTCAAAATCCCACAAGTGGCTCCTGAGAAAAGTGAATACATATTTACAGTGTTGGAGGCGGATTCAGATGAGCTGCTTCTCGGCCTGCGTCTGTCCCATGATAAACTCCACTTCCTGCACAAGGGCCATGGGAGCAGGAAACGCATCACTTTTAAGGCAGTAGGGCTGGATGATGACCGCTGGCACACTTTGGTTTTAGCGGTGACGGGATGCTACACAATCCTCACTGTAGATTGTGGCACACCTCTTGAGCTGTTGCTTGAAAGGCCCTTCCCCGAAGATCTTGATACAGCTGGCTCCACATTCTTCATTGCCAGCAGAAGGAGATGGAATGGCTTATTTTCTGGTCTGATGCGACAGCTAGTTCTGTTGCCTGGTTCAGATGCTACCTCACAAATATGTCCCTCATCTGAGCCCCGGCTATCTGCACTCTCAATTCCCCAGACCCTCTTACACCTGCCAATCAAGCCATCGTCCACTGATCTTCCCCTCCATCCGTATGAGGCAGAGGTTCGGGTGACTGCGGGTGTGAGTCCGCCCTGTGGACACTCAGAGGAGGGACAACTGTGGTTCAACACGCTGAAAAAGGGACTGTTTCTCTGTGATGGCATGATGTGGCTCACAATGCTGCAAGAAAAAGAGAAGCTGGACTATGTGGAGGATCATCAGGATTTATACACTTACTCTGAGACATTTGACATAGAAGTTTTCCACATCCCTTCCGTTGGGCTTTTCATTGCGACCGCCAACCGAGACTCCAACCTTGGTTCAGGAAtatacaaatggatggatgggaggTTTGAACGATATCAGAACATCAGCACCTACGATGCACAGGCATGGCAGTACTTCACAGTGGGCAAGAAGTTCCTGGTTGTGGCCAACTGCAAGAGTAAAGAAGCAGGAGAGCCCGAGCAGTCGGTGATTTATAAATGGAGCTCAAAGAAGCTGAAATTTATTCGCTACCAGACTCTGATCACACACAGCGCTCGCGACTGGGAGGCTTTCAACATTCAAGACGAAACTTTCCTGGCCGTGGCCAATCACAGGCAAGgGGAGAGAAACCACAATATTGATAGTGTAATCTACAAGTGGAACCAAGTTACCCAGTTTTTTGAGGTCAATCAGACAATCCCTACGGCTGGCGCGTATGACTGGGAGTTTTTCGCTGTCGGCCCTTATTACTTCCTTGTGGTGGCAAACACTTTCAATGGAAGATCTACAGTCATTGATTCTACAATCTATATCTGGCTGGGAGGGATGTTTCAGCCTTATCAGTCCATTACAACATTCGGGGCGATCGACTGGGAGATGTTCCAGATTGAAAATAGGGTTTTTCTGGCGGTGGCCAACAGCCAGATGCTGACGGAGGAGGGCAAGATCCTGTACTCCATCAACTCCACCATCTATGAGCTCAGCATGACATCACAGACCTTCGTCAGGTTTCAGGATATTGAAACAAACAGTGCTTTAGATTGGGAGTATTTTACTGTGGGAGATGACAAGTTCCTGGTGGTCGCCAACTCCTATGATGGAAACTCATACTCTCTTAATAGTGTTATATACAGATGGCAGGGTTACGAGGGCTTTGTCCCTGTCAACAGACTGAGCACCAATGGCTGCAGAGACTGGGAATTTTTCAACACAACCGACGGCTACTACCTCATCTACTCCAGTGCCAGAGCTGCTCTCTCTAAGGTCCTTAAATTAAGGACCATATAG

Function

symbol description
tspearb Predicted to be involved in signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 98 and ectodermal dysplasia 14. Orthologous to human TSPEAR (thrombospondin type laminin G domain and EAR repeats).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4270 Predicted to be involved in signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 98 and ectodermal dysplasia 14. Orthologous to human TSPEAR (thrombospondin type laminin G domain and EAR repeats).

Ensembl:

ensembl_id ENSDARG00000089235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074002 False 5043 mRNA 0.39 12 12596038 12625385
TCONS_00074003 True 2234 mRNA 0.48 12 12598081 12624622

Neighbor

gene id symbol gene type direction distance location
XLOC_037682 tra2b coding downstream 1035 12579077 ~ 12595003 (-)
XLOC_037681 igf2bp2a coding downstream 20262 12468500 ~ 12575776 (-)
XLOC_037680 ehhadh coding downstream 152312 12428226 ~ 12443726 (-)
XLOC_037679 C1H3orf70 coding downstream 171244 12403289 ~ 12424794 (-)
XLOC_037678 nup35 coding downstream 194167 12259469 ~ 12401871 (-)
XLOC_037684 sumo3b coding upstream 23320 12648705 ~ 12652984 (-)
XLOC_037685 pttg1ipb coding upstream 29893 12655278 ~ 12659140 (-)
XLOC_037686 myo10l3 coding upstream 38988 12664373 ~ 12811936 (-)
XLOC_037687 ankzf1 coding upstream 209029 12834414 ~ 12888157 (-)
XLOC_037688 NA coding upstream 264513 12889898 ~ 12903013 (-)
XLOC_037677 NA non-coding downstream 424253 12076843 ~ 12171785 (-)
XLOC_037675 NA non-coding downstream 740733 11822379 ~ 11855305 (-)
XLOC_037673 NA non-coding downstream 941007 11595987 ~ 11655031 (-)
XLOC_037671 NA non-coding downstream 1023684 11571312 ~ 11572354 (-)
XLOC_037667 BX000444.1 non-coding downstream 1749489 10845918 ~ 10846549 (-)
XLOC_037689 NA non-coding upstream 320172 12945557 ~ 12948957 (-)
XLOC_037690 NA non-coding upstream 329182 12954567 ~ 12956248 (-)
XLOC_037691 NA non-coding upstream 471836 13097221 ~ 13120257 (-)
XLOC_037692 NA non-coding upstream 620639 13246024 ~ 13246524 (-)

Expression


Co-expression Network