XLOC_037685 (pttg1ipb)


Basic Information

Item Value
gene id XLOC_037685
gene name pttg1ipb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12655278 ~ 12659140 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074005
GAAACTGGGAGGTCCTAAGTCTCCGTTTAATTCCCAACTTCCAGCAGAAAACACATGACCGACCACAGGGCTGAAAACAACATAGGTCTGCTGCGTTTGCCAACATGATCCAAACACGGACTTTTTTActctcttttgttttctttgtcttcACTTTTTCGGTGGTTGTTGCTCAGACGGCCAAAAGTCCAGTAACAAACTGCACTATAAAATCCAACACAACTTGTGAAGATTGTTTGAAGATTGTTTCGTGTTTGTGGTGCATCTCAAGCCAGAAATGCATTGACTATCCAGTGAACAGCGTTCTGCCCTCTCATAGTGTTTGTCCACTTTCAGATGCACGATGGGGACTGTGTTGGATGAATTTCCAGATTCTCATCATTACTATCTCTGTGATCGCGGGAGTGATTGTCATCGCCATATTCGTCTGCTGTTTCTGCTGCTGTAAATGTGAAAACATTGGCAGGTCTAAAAGGAGTGAGGAGCGAATGGAGAATCAAGCTAGTCTGAGAAAGTTTCGTCATGAGGAGAGGAAAGCAGAGATGAAGCAGAGACATGATGAAATGCGATTGAAATATGGTTTGAAGAAGGATAACCAGTACTCCAGATTTGAGAACAGCTAGGCAGCTTGTGATGATGCTCAGCTGTTGTCTTCTATTTTAAACTCAACTCTTCAGCACTCCTTTTTTGAAGAGCAAATTTGATTCAGTCATACCTGTATATTTATCAAATCTATAAGCAAaccacaaaaatattttttgtatttattgaaGCCTTTAGATTGAAGGGTAATGATGACTTTTGCAAATCAAACTAAGCATCCACATAAATTGACAACATAAATGTAATACTACAGCAACACTGAAAGCTACCTTTATTTTCCTCAAACTAATAAGCTTAATTATTAAGGACTTCAATAGAAAACCATTTTGTTCAAAGATTTTCTCTTTTCACATTTTCATACATGCTTAAGTGAAATTGATTTAATACTACTTTTTTGGCATTTTGATATAATGTTGCATTGAATGTTTTAATCTCTAGCTTATCGCCAAAGACTTgatttgttttgtgatttgttttgtgCACCTTTCAAAGTCGAATAAActtgaaaaatacattttaaaagtgaacactgtaaaa
>TCONS_00074006
gtttaactctaggggactttTTTTCTGGCGTTTCTTTTCAGATGAGTCTATTAATTTCTGCTGTGGACTGTATAAAATTTTGCTGCTATGAATTGTTAAAAACCTGTTTACTAGAACATTGGAGCACATATAGCCTATATAGCCTATCGGAAACGaattaataaaaagtattttgtatttttgtgttatAATTTAGCAGGTCTAAAAGGAGTGAGGAGCGAATGGAGAATCAAGCTAGTCTGAGAAAGTTTCGTCATGAGGAGAGGAAAGCAGAGATGAAGCAGAGACATGATGAAATGCGATTGAAATATGGTTTGAAGAAGGATAACCAGTACTCCAGATTTGAGAACAGCTAGGCAGCTTGTGATGATGCTCAGCTGTTGTCTTCTATTTTAAACTCAACTCTTCAGCACTCCTTTTTTGAAGAGCAAATTTGATTCAGTCATACCTGTATATTTATCAAATCTATAAGCAAaccacaaaaatattttttgtatttattgaaGCCTTTAGATTGAAGGGTAATGATGACTTTTGCAAATCAAACTAAGCATCCACATAAATTGACAACATAAATGTAATACTACAGCAACACTGAAAGCTACCTTTATTTTCCTCAAACTAATAAGCTTAATTATTAAGGACTTCAATAGAAAACCATTTTGTTCAAAGATTTTCTCTTTTCACATTTTCATACATGCTTAAGTGAAATTGATTTAATACTACTTTTTTGGCATTTTGATATAATGTTGCATTGAATGTTTTAATCTCTAGCTTATCGCCAAAGACTTgatttgttttgtgatttgttttgtgCACCTTTCAAAGTCGAATAAActtgaaaaa

Function

symbol description
pttg1ipb Acts upstream of or within hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in neural crest; pigment cell; pronephric duct; retina; and yolk syncytial layer. Orthologous to human PTTG1IP (PTTG1 interacting protein).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-10 Acts upstream of or within hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in neural crest; pigment cell; pronephric duct; retina; and yolk syncytial layer. Orthologous to human PTTG1IP (PTTG1 interacting protein).

Ensembl:

ensembl_id ENSDARG00000040039

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074005 False 1140 mRNA 0.37 7 12655278 12659140
TCONS_00074006 True 846 lncRNA 0.32 3 12655305 12656425

Neighbor

gene id symbol gene type direction distance location
XLOC_037684 sumo3b coding downstream 2294 12648705 ~ 12652984 (-)
XLOC_037683 tspearb coding downstream 29893 12596038 ~ 12625385 (-)
XLOC_037682 tra2b coding downstream 60275 12579077 ~ 12595003 (-)
XLOC_037681 igf2bp2a coding downstream 79502 12468500 ~ 12575776 (-)
XLOC_037680 ehhadh coding downstream 211552 12428226 ~ 12443726 (-)
XLOC_037686 myo10l3 coding upstream 5233 12664373 ~ 12811936 (-)
XLOC_037687 ankzf1 coding upstream 175274 12834414 ~ 12888157 (-)
XLOC_037688 NA coding upstream 230758 12889898 ~ 12903013 (-)
XLOC_037689 NA coding upstream 286417 12945557 ~ 12948957 (-)
XLOC_037690 NA coding upstream 295427 12954567 ~ 12956248 (-)
XLOC_037677 NA non-coding downstream 483493 12076843 ~ 12171785 (-)
XLOC_037675 NA non-coding downstream 799973 11822379 ~ 11855305 (-)
XLOC_037673 NA non-coding downstream 1000247 11595987 ~ 11655031 (-)
XLOC_037671 NA non-coding downstream 1082924 11571312 ~ 11572354 (-)
XLOC_037667 BX000444.1 non-coding downstream 1808729 10845918 ~ 10846549 (-)
XLOC_037691 NA non-coding upstream 438081 13097221 ~ 13120257 (-)
XLOC_037692 NA non-coding upstream 586884 13246024 ~ 13246524 (-)

Expression


Co-expression Network