G1855029


Basic Information

Item Value
gene id G1855029
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31412591 ~ 31415769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2123006
AAGCAGGTATGCATTGTGCATGATTTTGGAACATCGTGGAAGGACAGAGGGTTTTTGACCTTGTCTGGAAAACAGATTGCTCACAGTAACCTTGTTTTGTCTCTGTTACAGGCTATCCAGCTGCCCTCGTCTGTTTCTATAATCAAGTGTCAAGCACATTCTTTCTCTAACGACAACATCTCTCTGGGGAACACTAAAGCTGACCGTGCAGCTATATTGTCTGCTTCCTCTTCTGTTTCCCCCTTCCTACAGATGGCAGCAGTTCCAGCCCCCACCAACCCTTTCTCTGTTGATGACGTGGTTGCTTTGCAGGCAACGGCTGATGAGTCAGAGAGACGCAAGTGGGTTGGGTACTGTTGTAAAGACGCATCGGGTGTATGGCTGGATGAGAGGAGCAAACCGTTGTACTTTCCATTTCCTTGCCAAGTTGTCACATGGTCAGGATCATGTGTCCAAAGGAGGGATAGTGGATCTTgacctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgccttattattattggaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaaaaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacgcctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtatgaagggctatataaatacatttgatttgatttgattgagttGACCCCTTGTGATGGGAACAAGTATTGTTTGGTGATTGTTGACATGTTTTCTAAATGGATTGAAGCTTTTGACAAAGAACATGGAATGGAGGAATACATGGTTGATTATTGCGTCACCCTTAAATAATGCAGAAAACATCATGGGGTCAGGGTCAAGTCCATTTGTATATTCAGATTGACCCCTATGGAAACTCCCACAAGTGGTAACCTGCTCCTACCTTAATTGGCCCCAACCCACACACCCAACACTCTTTTTGTCCAGATGTAAGATTAGCAACCATTTCTGCTCTAGAGAGGAACAGATTTTCCTCATGGTTATGAGGGCCCAATGATCATCTACTTCTGTGCCACTACTCCGAACCTGCGTTGGCCCCGTTGGCTCAGGACTTATCTCATCCTCTGTCAGGTTTCCAACAATAGGAAAAACCTGCTGTTTTTATTATCACTCCTGTGCTAACACAGAGGAGGGCCACACTGCACCACTTGAACTGGCGAAGCCTCATTTCTCCTGGATCAGGAACTCGTCTGCAGAGCAACACGTGGATCCAGGTGTCTCTCTCAGCAACCTTCACCACAGTAGGGGTGATCAGAAGAACTTGGAACTTGGACCCCTCTTCCAACTCTTTCTTCACTCTTTCTCCTGAAGTCTTTGACCACTACGTAATCACCATGGCTCAAACAGTGCTCAGCTCCACTTGCCAAGTTCAGCAAAGACGCCTTCACTCGAGGAAAGAGAGTCTTGAAAACACTTAATCACATAGACCCACCATCATTTGCTAGGCCAGAGAATACTTTACTCCCACCCATGTCAGTTGGTGCAGAACAGATGTCGCTGCAACCCGATGGTGGTAAGAACTATGTAAACAATGGTTAAACATTGAGAGATTTAGTCAATCCTAAATTTGCAGAtcccgtgtgtatgtgtgtgcaattCAGATTGTAAAACCCAGAGTGAACGGCTTGTAAGATTGGAGTGTCTAGTGCAACGTATTGATTTCACTTACTTTAATATAACCTCCTTTGATAGAAGCTATAATCTAATGCTTACATAAACATTTTACAATAATTATCACAGTGATAAAATAAGGGAATGTGAGGGAAATGTTATGTTTAATAATCAAATCAATGCTAAAGTATCGAATCAATGCTACTTTCTAATAACTAATTACAAAGGTTCATGCAGGTGACTGACTGATTGTCTATGGAGGAATCCTCACTATCACTGTTCAACTTGGCAGTATGCCCAGAATATTGCTATGGGAACAACTGAGGTATCTCAGTTTCAAGATCTCAACTTACAGACAGAGAGCCTCTTGAggtattggtcagtcacatgtgCGAGCCACCAGTAGTGAACACAACTGCAGGGACCACCCCAACAGAGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2123006 True 2260 lncRNA 0.45 2 31412591 31415769

Neighbor

gene id symbol gene type direction distance location
LOC110502576 znt6 coding downstream 74690 31255071 ~ 31337901 (-)
LOC110502574 LOC106608078 coding downstream 173389 31151609 ~ 31239202 (-)
LOC110502571 LOC106608059 coding downstream 272059 31015540 ~ 31140532 (-)
LOC110502569 LOC106608004 coding downstream 402058 30908818 ~ 31010549 (-)
LOC110502567 rps27a coding downstream 577863 30826587 ~ 30834728 (-)
LOC110503101 LOC106608102 coding upstream 7458 31423227 ~ 31437297 (-)
LOC110502582 NA coding upstream 104185 31519954 ~ 31557450 (-)
LOC110502583 LOC106608142 coding upstream 144045 31559814 ~ 31615144 (-)
LOC110502585 NA coding upstream 222882 31638651 ~ 31643143 (-)
LOC110502587 LOC100380671 coding upstream 308806 31724575 ~ 31745791 (-)
G1854967 NA non-coding downstream 4722 31403291 ~ 31407869 (-)
G1854988 NA non-coding downstream 44298 31362116 ~ 31368293 (-)
G1854935 NA non-coding downstream 158238 31254140 ~ 31254353 (-)
G1854933 NA non-coding downstream 159280 31252816 ~ 31253311 (-)
G1854929 NA non-coding downstream 163605 31248779 ~ 31248986 (-)
G1855085 NA non-coding upstream 70235 31486004 ~ 31486253 (-)
G1855089 NA non-coding upstream 77077 31492846 ~ 31493091 (-)
G1855210 NA non-coding upstream 305890 31721659 ~ 31721866 (-)
G1855107 NA non-coding upstream 307838 31723607 ~ 31724230 (-)
G1854905 NA other downstream 194420 31217597 ~ 31218171 (-)
LOC110502553 NA other downstream 2480046 28919846 ~ 28932600 (-)
G1850441 NA other downstream 3334340 28074925 ~ 28078251 (-)
G1846858 NA other downstream 5972204 25439807 ~ 25440387 (-)
G1855326 NA other upstream 564228 31979997 ~ 31981333 (-)
G1855821 NA other upstream 1099297 32515066 ~ 32515408 (-)
G1855822 LOC106608363 other upstream 1099980 32515749 ~ 32516281 (-)
G1856217 NA other upstream 1221656 32637425 ~ 32646140 (-)
LOC110502621 LOC106608559 other upstream 2180389 33590457 ~ 33601995 (-)

Expression


Co-expression Network