G1853871


Basic Information

Item Value
gene id G1853871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31978665 ~ 31982219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2121752
tgataataataataataataacaaacagCCAGGTGCACAGGTGAAATTATTTGCTGTATTCCTAAACGAAAGCATCAATGGATGAACAATTGTAAAGGATTAATTACATAACTAAATATTTGTGGAAATATATGCATGACAAGATATAAAAACAGTCATTTGTTGATTGTGCCCTTATACTCGTGCCTTTACGCATTAATCATTCGCGTCTTCTCTTTATGCTTCGGGTCCACAGTCAAAAATTATGGCAAATGAGCAGTGTCAAATACAAACATTTAGGAAAAGTCAGAGGAGGAGGACAtagcttttttttttgtcaatttttttacatttacaaaaTCAAAAGTCAGTGGCCATTGGCGGTTCTAGTGTTAAAGACTTATGTAGCCAGGTGGTAAAAGCACATAGCTGTATTAGTTTatttccactagatggcactgtccctttaagagaTCAGTAAATAATGCGTGCAAGGTATTCTTGGATATCGCATGTAGAGTGAGAGGCTTGTTAGTAGCAGCCAAGCCGCCTGAGAATGTTTGGGGTCCATCGTGGCTTCTCGTGAAATGTATGGGTAAATATTACTCTTAATGCAGCTTTGTACAGTTATACATATTAAGCATCCTTTGCAATGTACAACAGTTCACTTTGTAATATTTAGTTAGGATGATTAAATTAGACTTGATGTTTGCAGATTGTAATCGGATGTTGGTGGTTAGCTACTGCTAGTTGCATTAAGTTACTCTCGAAAACACGTTGTTGAGTTTTACAAGATATCTGAAGTGTGAGCTACATTTCAAAATGAAAGTTTAGTCATGGTCATTTTCAGTTGAGGGAAAATATTATCATTGCTGTGATAATGACATTAAATGGGGTTTATCATTTTTCAAATTCTAGAGGGGAGAACATGACCCGTcccacgtgtgcacatttgtcGTGGCCCGTGGACAGTATTGTACGTATTTATTTGTTAAAAAGACAAGATCTATTCTTGACAAGGTTATTGTGAACTGTTA
>TU2121750
AAATTAGACTTGATGTTTGCAGATTGTAATCGGATGTTGGTGGTTAGCTACTGCTAGTTGCATTAAGTTACTCTCGAAAACACGTTGTTGAGTTTTACAAGATATCTGAAGTGTGAGCTACATTTCAAAATGAAAGTTTAGTCATGGTCATTTTCAGTTGAGGGAAAATATTATCATTGCTGTGATAATGACATTAAATGGGGTTTATCATTTTTCAAATTCTAGAGGGGAGAACATGACCCGTcccacgtgtgcacatttgtcGTGGCCCGTGGACAGTATTGTACGTATTTATTTGTTAAAAAGACAAGATCTATTCTTGACAAGGTTATTGTGAACTGTTAGCGAGGCAAACTGAgtggtttttgttttgttttcttatTTTACAGAACCGTTTCTTATGCACTTTGTCTTGATACATTTTGTTTAGTGATTGGATTCCCTAATACCAAAGTAGGTCCAGAGATTTTGACTCATTGTACTTTTGTTTCTAGCACTTCAAGCTCATTCAGTAAGCAGGTTAGAAAAAACAGTAAAGCAATTCCTTATTATTGTAGTCTATATACACTTTATTAAAATAACTTTCCAAGTATAATCTATTCAAAGATACAGTAGGATGAAAATGAGGAGGAATTAACGCAGAATAATTTACTGCATGGGAGTAAACAAATATCATAATGCATACAGTAAATGAGGAAAACAACGattaaaacatttgatctcatcTCCATACTTCAGAATGAACCACAATTATATAAagtcatacatacagtgcattcgtaaaatcctctcactgtcaactgcatttactatcagcaaatttaacatgtgtaaatatttgtatgaacataagattcaacaaatAAGAcacactgaacaagttccacagatatgtgactaacagaaatggaataatgtgtccctgaacaaagggggggtccaaatcaaaagtaacagtcagtaccaGCTACATTaattactgcagtgcatctcctcctaatggactgcaccagatttgccagtccttgctgtgagatgttaccccactcttccaccaaggcacctgcacgtTCCCAGACATTTTTGGGGGAAtaaccctagccctcaccctccgatccaacaggtcctagatgtgctaaatgggattgagatccgggctcttcgctggccatggcagaacactgacattcctgtcttgtaggaaatcatgcacagaacgagcagtatggctggtggcattgtcatgctgtaccacatgagggaggaggatgtcttccctgtaacgcatagtgttgagattacctgcaatgacaagctccgtcagatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaatcgatcccgctccagagtacaggcctcggtgtaacgctcattccttcgacgataaacgcaaatgcgaccatcacccctggtgagacaaaaccgcgactcgtcagagcactttttgcaagtcctgcctggtccagcgatggtgggtttgtgcccataggcgacgttgttgccggtgatgtctgccttacaataggcctacaagcccagcctctctcagcctattgcggacagtctgagcacggatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgtgcggatgtaccgatcctgtgcaggtgttgttacacgtggtctggcactgcgaggacaatcagctgtccgtcctgtctccctgtagcggtgtcttaggtgtctcacagtacagacatggcaatttatttccctggccacatctccAGTCCTcaagcctccttgcagcatgcctaaggcacattcactcagatgagcagggaccctgggcatctttcttttggtgaataaatatgacatttacataaaagtattcagaccctttaatctgtactttgttgaagcaccttaggcagcgattacagccttaagtcttcttgtaaataaggtatttctgttttttattttcaatacatttgcaaaaatgtataaaaaactatttttgtttgtcattatggggtattgtgtgtagattgaggattttttaaaatgtaatccattttagaattaggctgtaacgtaaacaaaatgtggaaaaagtcaaaaggactgaatactttccaactGCTCTGTATTTAAGTGGAAATAGATATATTATAAAAGGATCAGCATGTTTACAACTTTTTTCTGTCAATTACTTCCCCTCACTGCAGCCCCAACAAAAAGCTAACGTAAGCATCCCACATGACATAACATTCAAAGGGGATCTTTGTAAAGGTTTTCCTCAGAAGTCTCACGTGATAGACCCAATGTGTGGAGTGGGAACTATCACACAAGAGCCAGGTTGattgagagagtagagaggaaacaTTCAGAACACACCTGGCCAAGAGAAGGACGTGAGAACAAGATTTTTGGGCCTTTTGATGTTAACACAGAACACGACCAAACATCAAGAGAGGAatatattcagagagagaaagatgagacgAAACACATAAACTCCTTCCATGCCCTGTGGTAGGTACCTTGATGTCAGACAAAGGCCAGGCTATAGTGGATCTCAGCTCAGTAGTCTTCATAGTCTTCATATAGCTCCAGTTGGCTAAAGGAAGCCTGGAGAGCTAGATGAAACCATACGCTATTTGAAATACTCAACTAGAAGAGATTAACAAAACAAAACCATTAAATATGGTTGACGACACAGAGGGCATCAGAACACGTTCTGATGATGTCACCAACCTGAGGAGAGGACCCCGTGGTCATCGCAtattgtacatattacctcaactaccatGTACCCTCCGTACCC
>TU2121754
GCAATTCCTTATTATTGTAGTCTATATACACTTTATTAAAATAACTTTCCAAGTATAATCTATTCAAAGATACAGTAGGATGAAAATGAGGAGGAATTAACGCAGAATAATTTACTGCATGGGAGTAAACAAATATCATAATGCATACAGTAAATGAGGAAAACAACGattaaaacatttgatctcatcTCCATACTTCAGAATGAACCACAATTATATAAagtcatacatacagtgcattcgtaaaatcctctcactgtcaactgcatttactatcagcaaatttaacatgtgtaaatatttgtatgaacataagattcaacaaatAAGAcacactgaacaagttccacagatatgtgactaacagaaatggaataatgtgtccctgaacaaagggggggtccaaatcaaaagtaacagtcagtaccaGCTACATTaattactgcagtgcatctcctcctaatggactgcaccagatttgccagtccttgctgtgagatgttaccccactcttccaccaaggcacctgcacgtTCCCAGACATTTTTGGGGGAAtaaccctagccctcaccctccgatccaacaggtcctagatgtgctaaatgggattgagatccgggctcttcgctggccatggcagaacactgacattcctgtcttgtaggaaatcatgcacagaacgagcagtatggctggtggcattgtcatgctgtaccacatgagggaggaggatgtcttccctgtaacgcatagtgttgagattacctgcaatgacaagctccgtcagatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaatcgatcccgctccagagtacaggcctcggtgtaacgctcattccttcgacgataaacgcaaatgcgaccatcacccctggtgagacaaaaccgcgactcgtcagagcactttttgcaagtcctgcctggtccagcgatggtgggtttgtgcccataggcgacgttgttgccggtgatgtctgccttacaataggcctacaagcccagcctctctcagcctattgcggacagtctgagcacggatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgtgcggatgtaccgatcctgtgcaggtgttgttacacgtggtctggcactgcgaggacaatcagctgtccgtcctgtctccctgtagcggtgtcttaggtgtctcacagtacagacatggcaatttatttccctggccacatctccAGTCCTcaagcctccttgcagcatgcctaaggcacattcactcagatgagcagggaccctgggcatctttcttttggtgaataaatatgacatttacataaaagtattcagaccctttaatctgtactttgttgaagcaccttaggcagcgattacagccttaagtcttcttgtaaataaggtatttctgttttttattttcaatacatttgcaaaaatgtataaaaaactatttttgtttgtcattatggggtattgtgtgtagattgaggattttttaaaatgtaatccattttagaattaggctgtaacgtaaacaaaatgtggaaaaagtcaaaaggactgaatactttccaactGCTCTGTATTTAAGTGGAAATAGATATATTATAAAAGGATCAGCATGTTTACAACTTTTTTCTGTCAATTACTTCCCCTCACTGCAGCCCCAACAAAAAGCTAACGTAAGCATCCCACATGACATAACATTCAAAGGGGATCTTTGTAAAGGTTTTCCTCAGAAGTCTCACGTGATAGACCCAATGTGTGGAGTGGGAACTATCACACAAGAGCCAGGTTGattgagagagtagagaggaaacaTTCAGAACACACCTGGCCAAGAGAAGGACGTGAGAACAAGATTTTTGGGCCTTTTGATGTTAACACAGAACACGACCAAACATCAAGAGAGGAatatattcagagagagaaagatgagacgAAACACATAAACTCCTTCCATGCCCTGTGGTAGGTACCTTGATGTCAGACAAAGGCCAGGCTATAGTGGATCTCAGCTCAGTAGTCTTCATAGTCTTCATATAGCTCCAGTTGGCTAAAGGAAGCCTGGAGAGCTAGATGAAACCATACGCTATTTGAAATACTCAACTAGAAGAGATTAACAAAACAAAACCATTAAATATGGTTGACGACACAGAGGGCATCAGAACACGTTCTGATGATGTCACCAACCTGAGGAGAGGACCCCGTGGTCATCGCAtattgtacatattacctcaactaccatGTACCCTCCGTACCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2121752 False 1016 lncRNA 0.36 1 31978665 31979680
TU2121750 False 2883 lncRNA 0.42 1 31979337 31982219
TU2121754 True 2346 lncRNA 0.43 1 31979874 31982219
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Neighbor

gene id symbol gene type direction distance location
LOC110502597 LOC106608325 coding upstream 2629 31969957 ~ 31976036 (+)
LOC110503062 arhgef33 coding upstream 87132 31871734 ~ 31891533 (+)
morn2 morn2 coding upstream 108922 31866319 ~ 31869743 (+)
LOC110502586 LOC100196543 coding upstream 259715 31653358 ~ 31718950 (+)
LOC110502584 LOC106608814 coding upstream 354481 31620398 ~ 31624184 (+)
mrps5 LOC106608355 coding downstream 466567 32448786 ~ 32474652 (+)
LOC110502602 LOC106608363 coding downstream 507048 32489267 ~ 32530254 (+)
LOC110502603 LOC106608383 coding downstream 590227 32572446 ~ 32646173 (+)
LOC118943948 NA coding downstream 592622 32574841 ~ 32574893 (+)
LOC110502609 ppa1 coding downstream 1001253 32983472 ~ 33000172 (+)
G1853856 LOC106608247 non-coding upstream 77095 31900379 ~ 31901570 (+)
G1853841 NA non-coding upstream 123252 31855189 ~ 31855413 (+)
G1853840 NA non-coding upstream 123812 31854613 ~ 31854853 (+)
G1853785 hnrll non-coding upstream 211590 31765918 ~ 31767075 (+)
G1853784 NA non-coding upstream 214207 31762838 ~ 31764458 (+)
G1853917 NA non-coding downstream 13432 31995651 ~ 31995853 (+)
G1853944 LOC106608331 non-coding downstream 54011 32036230 ~ 32040475 (+)
G1853966 NA non-coding downstream 98252 32080471 ~ 32080968 (+)
G1853990 NA non-coding downstream 135087 32117306 ~ 32138022 (+)
G1854048 NA non-coding downstream 225842 32208061 ~ 32208946 (+)
G1853162 rps27a other upstream 1146222 30826585 ~ 30834692 (+)
G1853092 NA other upstream 1172211 30805550 ~ 30806454 (+)
LOC110502560 LOC106607954 other upstream 1325449 30547124 ~ 30659333 (+)
G1855733 NA other downstream 526019 32508238 ~ 32509474 (+)
G1855723 NA other downstream 536708 32518927 ~ 32519677 (+)
G1856094 LOC106577218 other downstream 955688 32937907 ~ 32942047 (+)
wnt8b LOC106608511 other downstream 1245614 33227748 ~ 33236137 (+)

Expression

G1853871 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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G1853871 Expression in each Bioproject

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G1853871 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network