XLOC_000377 (cnnm2b)


Basic Information

Item Value
gene id XLOC_000377
gene name cnnm2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31725154 ~ 31799359 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000646
ACTCGCTGAAAGTGCGATCAGTTTCAGCCGCGTAGTGGAACTCAGCGAGACCTGATGCACAAGTCAAGGCGACGCGCAGCAGAGATGAAGCCGGATTGGCTCTGATTTTTAAAAGCCCTTTCATTCAAGAGGCTGTCCATTATCAACATGGCAGAACCGTCGGTTCCAGTACCCCCTCGAAAAATGGCGTCACTCAGCCGGGTCCGAGCCTTTACTCTGATTTTCTTAACTGCAAGCAGTTGTTTAATTACTCCCACAAGTGGCAAGGAAGGAGGGGGAGAGGAGACGGTCATCATCGGGCTGCGGCTGGAGGACACGGACGACATTTCCTTCATGGACAGGGGCTTTTTGCGGGTCAGCGAGAGGTCTCGGGTGAGATTGAGGGTGTACGGGCAAAACATCAACAACGAGACTTGGTCCAAAATCGCATTTACGGAGCACGAGAGGAGCCGAGTGATCGGCAACATCGACAGCTCTTCGGGGGACAACCAGAGTCAGGAGGACACGTCGGGCTTGCACCCCTGCGGCATCAGAACTTCGGATATTCTGATCTTGCCCAACATCGTTTTAAACCGCAAGACGTCTGGCACCGTGGAGATAGAGGTCAAACCTCTGCGAAAGACTGAGCGGAGCAAAGCGTACTACCTGTGCATCGCCACCTCCACACCTGCTGTGGCCGGAGCGCACGACCCGTGGACCGAGAACACGTGGATCTATCACGATGGAGAGGACACCAAAGTGATCGTGGTGGAGGAGAAAAAGTTCCTGCTGCCCTTCTGGCTCCAGGTCATCTTCATTTCTATGCTGCTCTGCCTCTCGGGCATGTTCAGCGGCTTGAACTTGGGGCTGATGGCGCTGGACCCCATGGAGCTGCAGATCGTCCAGAACTGCGGGACGGAGAAGGAGAAGAACTACGCGAGGAAAATCGAGCCCGTGAGGAGCCAGGGGAACTACCTGCTCTGCTCGCTTCTTCTGGGCAATGTTCTGGTCAACACCACCTTGACTATTCTGCTGGATGACATCGCCGGCTCTGGATTGATAGCTGTAGTGATGTCCACCATCGGCATCGTGATATTTGGGGAGATTGTGCCCCAAGCCATATGCTCACGACACGGTCTCGCTGTGGGTGCGAATACAATCTTCTTGACCAAATTCTTCATGCTGCTCACTTTCCCCGCGTCCTATCCGGTAAGTAAGCTGCTCGATTATCTCCTCGGGCAGGAGATCGGCACGGTGTACAACCGGGAGAAGCTCTTGGAGATGTTGAGGGTCACGGACCCGTATAATGACTTGGTGAAAGAGGAGCTGAACATCATCCAGGGCGCGCTGGAGCTAAGGACTAAGACAGTGGAAGATGTGATGACCCCGCTACGCGACTGCTTCATGATCACCGGGGACGCGACGCTTGACTTCAACAGCATGAGTGAGATCATGGAGAGCGGCTACACGCGCATTCCGGTGTTCGAGGGCGACAGGTCCAACATCGTGGACCTGCTGTTCGTCAAGGACCTGGCCTTTGTGGATCCCGACGACTGCACCCCGCTGAAGACGATAACCAAGTTCTACAGCCATCCGTTGCATTTCGTCTTCAATGACACCAAACTCGACGCGATGCTGGAGGAGTTCAAGAAAGGTAAATCTCACTTGGCAATAGTCCAGCGGGTCAACAACGAAGGAGAAGGTGATCCATTCTATGAAGTGCTTGGCATCGTCACCCTGGAGGACGTCATTGAAGAAATCATCAAGTCTGAAATCCTGGATGAGACAGACTTATATActgacaacaaaacaaaaaagaaaatcaccCATCGAGAGAGGAAGCAGGATTTCTCAGCTTTCAAGCACATGGACAATGAAATGAAGGTTAAAATATCACCTCAGCTTCTACTGGCTACTCTACGTTTCCTAGCAACAGAAGTTGAGCCATTCAGTCCCAGCCAGATGTCCGAAAAGATCCTTCTGCGTCTCCTCAAACACCCCAATGTCATCCAGGAGGTCAAATATAATGACAAGAATAAAAAGGCCATCGAACATTACCTCTTCCACCGCAACAAGCCTGTGGACTATTTCATCCTCGTCCTGCAGGGGAAAGTGGAGGTGGAGGCAGGCAAGGAGGGACTGAGGTTTGAAGCTGGAGCTTTCTCTTCATATGGGATGATGGCTCTCACTGCTTCTCCAgAAAACAAATCCCCACCTCGATCATTTGGACTGAATCATTCTGACTCATTAAATCGTAGTGAGCGAATTGAAGTCATCACACCTTCACTGGGCAGCAGTAACAACCAGCTCAACGCCTTCCTGCAAATCTATGTGCCAGACTATTCTGTCAGAGCTGTGTCAGACGTACAGTACATTAAGGTAACGCGACAGCAGTATCAAAATGCCGTCATGGCCTCACGCATAGACAAAACCCCACAGTCCTCAGAGAGCGAGTACACCAAAATCGAAATGGCTTTGACAGAGCTCCACGATGGACTGACCGATGAAACCACCACGCTGTTCAACCAGACACAGAACTGCGTCGTCCACAACAAGTCCAACCACACAGGCCACAGCGAGGGTCCCATCTAGCCCTCAGCGGGGTGGTGGGGAAACACCACCCCAAACCGATATAAACTAACAGTGCAGTACTACTGGGGCTTAAGCTTGGGTTGACCCGACGCAATATGGAATAGTCCAGTGACCCGCTTCGGACCCCTTCATCCTGATAAACCGCAGTGTTTATGTCCCCCAGACCAAAGAGTTTGGAGGATGGACATTGTTGTGCTCGGATGAGCCCCTCCAGCTACACTCAGACTGTCCCGCGATGTTCACAAACACAAAAGACGTACTCCAGACAGATGTAATAGGGTGAATCAAAGACTGTTCCAAATACCGCTTTGAAGGAAACCATGAACCAAGAGCATTCTactcacatatttatttattttttatgcatttgtatATATGTGCGTGTCTGAGGATATAATTGTTGGCACATGCAAACCTGTCTGTAaattgtgcatgtgtatgtgtgtgcctcTATGAGTGTcacatgctatatatatatacagttacagATACATCATTGTATATGTACTGGTGAGGGTCTTTTACATGTATATTTCAGAAATGCTTATTTCTACTGTCCTAAATCTGGTATATCCCTTTTagaccttttttttgtttgttaaaaatatatatatatgaatcatTATGTTGCctttaaaaatcatattaattTTTAACAAGTGcaatgaaacattttatttaaaagatgatTTATCATGATTACTGTATTGTAAATTATAGATCTGTTTGTATCTATTCTATTTTATCACGTTTGTATATTTGTTCGCAGATATTTCGGATTCACTTCCAAGGATAaacaggtctttttttttttgtctgctttaAAAGTTGAATTCTATCAAAGGcacaataattttacatttaaagccgaacatgtttttatttaaactaaatgaCAGACCTGTCAGGACTTTATGCAAGGGAGAATCGATATGCATCCGTGCGATTCCTAACCGAATTCAGGCCGTAACATAAAGAGTCATTAAAAGAACTACTACATTAAATCATCTGTAAGAGAGATTCCAATGTGTTTAAAATggctgcatgtgtgtgtaataCCTTTGTGTCTCTAACACTGATTTCAGTGGTTATTTATATGACGATGGAAACTCTTGCTATGCATACAGTTGTCTTTGAATTGAACATCATGTTATCGTTTTGTTAATGATGTACCATATTTTTTTTTGAAAGGTGACATTAATTGTCACATTTGACTATTATTTGAACAATCCCAAATCCATTCCTGTGATTATTCCTATATAAATGTGGCAGCTGCATGACCCTGTTTCTACAATGTCAGACTTTGTGGTAAATCTGATTCAGGCAGCTTTTAATACTTCACCCTAgatgtttggtttttttttttttttcgtttttgtcTTTCAATGGCAACTTGAACCACTCCAGATAAATAAGAGGAATGCATTGCTTGTTGTATTCTATTATTTATACATGGGTCAGTACCACCAACATCCACTACTTGGCACTACGGTCTAACAATTTAGCCAAACTAAACCTTGACAAGGTTATAATCTTACAACTGATGCTCTTTATACCAAAGATTTTACTGAAGAGGTGTGATCAGAGATTGTTGGGCTTTATTTAGTGATAAAGCcaggattgatttgttttttcccTAGACAGACGCTCTTGTGgggttaaatacatttttgttttctaaTTTGCTTTGTCAATGAATTGTAGCTACTTTGTAACTAAAATGTAAACTTAGGGAGGAAAACAGTCTAGAGAAAGTGCTATTAAACATTCATCAGTTTCAC
>TCONS_00000647
ATGGCAGAACCGTCGGTTCCAGTACCCCCTCGAAAAATGGCGTCACTCAGCCGGGTCCGAGCCTTTACTCTGATTTTCTTAACTGCAAGCAGTTGTTTAATTACTCCCACAAGTGGCAAGGAAGGAGGGGGAGAGGAGACGGTCATCATCGGGCTGCGGCTGGAGGACACGGACGACATTTCCTTCATGGACAGGGGCTTTTTGCGGGTCAGCGAGAGGTCTCGGGTGAGATTGAGGGTGTACGGGCAAAACATCAACAACGAGACTTGGTCCAAAATCGCATTTACGGAGCACGAGAGGAGCCGAGTGATCGGCAACATCGACAGCTCTTCGGGGGACAACCAGAGTCAGGAGGACACGTCGGGCTTGCACCCCTGCGGCATCAGAACTTCGGATATTCTGATCTTGCCCAACATCGTTTTAAACCGCAAGACGTCTGGCACCGTGGAGATAGAGGTCAAACCTCTGCGAAAGACTGAGCGGAGCAAAGCGTACTACCTGTGCATCGCCACCTCCACACCTGCTGTGGCCGGAGCGCACGACCCGTGGACCGAGAACACGTGGATCTATCACGATGGAGAGGACACCAAAGTGATCGTGGTGGAGGAGAAAAAGTTCCTGCTGCCCTTCTGGCTCCAGGTCATCTTCATTTCTATGCTGCTCTGCCTCTCGGGCATGTTCAGCGGCTTGAACTTGGGGCTGATGGCGCTGGACCCCATGGAGCTGCAGATCGTCCAGAACTGCGGGACGGAGAAGGAGAAGAACTACGCGAGGAAAATCGAGCCCGTGAGGAGCCAGGGGAACTACCTGCTCTGCTCGCTTCTTCTGGGCAATGTTCTGGTCAACACCACCTTGACTATTCTGCTGGATGACATCGCCGGCTCTGGATTGATAGCTGTAGTGATGTCCACCATCGGCATCGTGATATTTGGGGAGATTGTGCCCCAAGCCATATGCTCACGACACGGTCTCGCTGTGGGTGCGAATACAATCTTCTTGACCAAATTCTTCATGCTGCTCACTTTCCCCGCGTCCTATCCGGTAAGTAAGCTGCTCGATTATCTCCTCGGGCAGGAGATCGGCACGGTGTACAACCGGGAGAAGCTCTTGGAGATGTTGAGGGTCACGGACCCGTATAATGACTTGGTGAAAGAGGAGCTGAACATCATCCAGGGCGCGCTGGAGCTAAGGACTAAGACAGTGGAAGATGTGATGACCCCGCTACGCGACTGCTTCATGATCACCGGGGACGCGACGCTTGACTTCAACAGCATGAGTGAGATCATGGAGAGCGGCTACACGCGCATTCCGGTGTTCGAGGGCGACAGGTCCAACATCGTGGACCTGCTGTTCGTCAAGGACCTGGCCTTTGTGGATCCCGACGACTGCACCCCGCTGAAGACGATAACCAAGTTCTACAGCCATCCGTTGCATTTCGTCTTCAATGACACCAAACTCGACGCGATGCTGGAGGAGTTCAAGAAAGGTAAATCTCACTTGGCAATAGTCCAGCGGGTCAACAACGAAGGAGAAGGTGATCCATTCTATGAAGTGCTTGGCATCGTCACCCTGGAGGACGTCATTGAAGAAATCATCAAGTCTGAAATCCTGGATGAGACAGACTTATATAGTATGTGCCATGAACGTCTtgtatttttgcatgtttttgtatttttattaaagaaatgGAGCTTAAACAGTacatgtaaaattataaaaaattgcaCTACTGTATAAGGGATGCTTCATTAATGTTTGAACTAAATATTTATTATCAAGTAGTCACCAGGAATAGTTTATGACAAACAAAACGTGTCATCTATGTGTTTCAAAAGCTATGCCACTTTACATTTCTAATATATGTTTTTTCCTGAATAGTGCACAGATTCAAATCATGCAGACTATAAAGGCccgggtatacttgaaacaaagTTCTTTTTTGTTATTCGTTTAAGATCAAGAAGAAAAGGCTTGTAATGGTATACTGTTTTTGAATCTTCCAAAACAGAACCAAATATACTCAAGCCTCCAGTCTGTTCATGTTgctaactttattttgatggtccatttgagtattagtagactgcttaatatctgttgatactgatccttcaacagacatttaactaactttaagacactttgcaagtacatgtcaacatgcactaactctaaccccaacctaacagtctacttgcaatgtaatgagaattagttggcatgtagatgcaatgtagccTTATATTCAACATACAGgccaccatcaaaataaagtttgacctAAATACATCCCTCAATCACATTCTCGTCTCGCTTTTTTATTAGTCAAtgaaaatgtcagtatattttgT

Function

symbol description
cnnm2b Acts upstream of or within brain development and magnesium ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; opercular flap; pleuroperitoneal region; and scale. Used to study schizophrenia. Human ortholog(s) of this gene implicated in renal hypomagnesemia 6. Orthologous to human CNNM2 (cyclin and CBS domain divalent metal cation transport mediator 2).

GO:

id name namespace
GO:0010960 magnesium ion homeostasis biological_process
GO:0007420 brain development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-26 Acts upstream of or within brain development and magnesium ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; opercular flap; pleuroperitoneal region; and scale. Used to study schizophrenia. Human ortholog(s) of this gene implicated in renal hypomagnesemia 6. Orthologous to human CNNM2 (cyclin and CBS domain divalent metal cation transport mediator 2).

Ensembl:

ensembl_id ENSDARG00000078733

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000646 False 4352 mRNA 0.45 7 31725154 31799359
TCONS_00000647 True 2351 mRNA 0.47 2 31725301 31779857

Neighbor

gene id symbol gene type direction distance location
XLOC_000376 as3mt coding upstream 2279 31706668 ~ 31722875 (+)
XLOC_000375 wbp1lb coding upstream 25199 31674297 ~ 31699955 (+)
XLOC_000374 poll coding upstream 52811 31657842 ~ 31672343 (+)
XLOC_000373 fgf8b coding upstream 55253 31638274 ~ 31669901 (+)
XLOC_000372 slc2a15b coding upstream 126737 31573225 ~ 31598417 (+)
XLOC_000378 inab coding downstream 65045 31864404 ~ 31867717 (+)
XLOC_000379 anos1a coding downstream 143602 31942961 ~ 31979510 (+)
XLOC_000380 NA coding downstream 210903 32010262 ~ 32011794 (+)
XLOC_000381 NA coding downstream 212521 32011880 ~ 32012378 (+)
XLOC_000382 BX901898.2 coding downstream 214329 32013688 ~ 32014487 (+)
XLOC_000371 CT573247.1 non-coding upstream 204182 31519239 ~ 31520972 (+)
XLOC_000370 NA non-coding upstream 365835 31354585 ~ 31359319 (+)
XLOC_000369 NA non-coding upstream 580627 31141119 ~ 31144527 (+)
XLOC_000365 BX548015.2 non-coding upstream 865630 30853969 ~ 30859524 (+)
XLOC_000361 BX255890.2 non-coding upstream 1497649 30227391 ~ 30227505 (+)
XLOC_000383 BX901898.1 non-coding downstream 218078 32017437 ~ 32018115 (+)
XLOC_000386 CU462859.1 non-coding downstream 714630 32513989 ~ 32514104 (+)
XLOC_000388 CU915272.1 non-coding downstream 906750 32706109 ~ 32706227 (+)

Expression


Co-expression Network