Gene
RNA
| Item | Value |
|---|---|
| gene id | G1858602 |
| gene name | LOC106613168 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 34878679 ~ 34879051 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| methylcytosine dioxygenase TET1-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2126912 | False | 373 | lncRNA | 0.54 | 1 | 34878679 | 34879051 |
| TU2126910 | True | 224 | lncRNA | 0.60 | 1 | 34878828 | 34879051 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc25a16 | slc25a16 | coding | downstream | 41038 | 34823020 ~ 34837641 (-) |
| LOC110502637 | LOC106613187 | coding | downstream | 68561 | 34794341 ~ 34810118 (-) |
| anxa11a | LOC106613295 | coding | downstream | 305618 | 34548636 ~ 34573061 (-) |
| dlg5a | LOC106613304 | coding | downstream | 343031 | 34474361 ~ 34535648 (-) |
| LOC110502644 | LOC106613146 | coding | upstream | 36451 | 34915502 ~ 34936389 (-) |
| LOC110502648 | LOC106613093 | coding | upstream | 173845 | 35052896 ~ 35059019 (-) |
| LOC110503106 | NA | coding | upstream | 186295 | 35065346 ~ 35066105 (-) |
| LOC110502651 | LOC106613069 | coding | upstream | 317142 | 35196193 ~ 35222086 (-) |
| LOC110502652 | LOC106577244 | coding | upstream | 447639 | 35326690 ~ 35342828 (-) |
| G1858601 | NA | non-coding | downstream | 621 | 34877619 ~ 34878058 (-) |
| G1858600 | NA | non-coding | downstream | 2496 | 34875618 ~ 34876183 (-) |
| G1858599 | LOC106613168 | non-coding | downstream | 5544 | 34872706 ~ 34873135 (-) |
| G1858595 | NA | non-coding | downstream | 10895 | 34867563 ~ 34867784 (-) |
| G1858592 | NA | non-coding | downstream | 16262 | 34861660 ~ 34862417 (-) |
| G1858603 | LOC106577253 | non-coding | upstream | 661 | 34879712 ~ 34880102 (-) |
| G1858604 | NA | non-coding | upstream | 1268 | 34880319 ~ 34880621 (-) |
| G1858516 | if4e | non-coding | upstream | 27506 | 34906557 ~ 34909136 (-) |
| G1858620 | NA | non-coding | upstream | 30399 | 34909450 ~ 34909649 (-) |
| G1858630 | NA | non-coding | upstream | 50120 | 34929171 ~ 34929514 (-) |
| G1858575 | LOC106613168 | other | downstream | 37017 | 34839900 ~ 34841662 (-) |
| G1858519 | NA | other | downstream | 57114 | 34820776 ~ 34821565 (-) |
| kcnma1a | LOC106613356 | other | downstream | 690809 | 34177056 ~ 34469529 (-) |
| LOC110502621 | LOC106608559 | other | downstream | 1276838 | 33590457 ~ 33601995 (-) |
| G1856217 | NA | other | downstream | 2232539 | 32637425 ~ 32646140 (-) |
| G1858636 | NA | other | upstream | 57638 | 34936689 ~ 34968861 (-) |
| G1859038 | NA | other | upstream | 364063 | 35243114 ~ 35243589 (-) |
| LOC110502661 | golga7b | other | upstream | 1075169 | 35954220 ~ 36014458 (-) |
| G1860462 | NA | other | upstream | 1569780 | 36448831 ~ 36451459 (-) |
| G1861368 | NA | other | upstream | 2455976 | 37335027 ~ 37335414 (-) |
