XLOC_037713 (si:dkey-103d23.3)


Basic Information

Item Value
gene id XLOC_037713
gene name si:dkey-103d23.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15782048 ~ 15789526 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074051
CAGACAATCACGGGAGCCACGAGACAAGTTGGTTAGCAGGAAAATAAAGtgaaAAGCAAATTTGGATTACCAACAACTGCAGATCTTCAAGTTTTTGATGACACGGACACTAATGTAGAAGAGGACATCTTCCACGAGTTAATGGAAAGCAGTCCACATGTATGCTTAACTGTAAGATGCTTGGAAGAAAATATGTCTGCTGGCCTGCCTGAGgtgatttcACCCACAAGATCATCAACAGCCAGCACATGTACTGATACAGTTTCAATCTCTTCTACGGATCATGATGATCCAGAGCAACCAATGCAGAATCAAATGACAAGGGCCAGCAGGTGCTTGATGGTAGATGCTGAAAGGGCAAAACGGATTGTCCAAGATGCTTTGGAAAAGCAATCTGGTGGTGATGAAGTGCTTGATGAATACAAGGCCACAAAAACTTTAAAGCACAGCACTAGACGGCAACTGGTTAATATTGTTGTCAGTCACATGACAGAGATTCATGGGAGAATTCCCACCCGCAAGCAACGGGAGACTTATGCCTTGGGTATTATTTCTCTCTTTCCCAGCCTGAGAGACCCGTTTTCAGCAAAAGGCTATATAAATCAAGACTTTGGTTTGCTGTTCAATGCTGAAACATCCAACAAGTTGCTTGAGAGATGGGAGACCTCATTTAAGCACAAGATCATCAATGAGGCCAAATCTCTAACTTCAACTGCAGAAATTCGTGGTCTTATCAATTCAACAGAGGGACAAGGATCTGAAAATGACTGGGATAGTGATATGTCAGCTGTCCTACTCCTGTTGCATCTCCTACCTCCTTCTTCAGGGAGAAAGAGGACTAAGATTAGTCCAACAGAGGCCGTTGAAAGACTTGTGCATTTCCATAAGtCTTGCACCAGTATTGAAGGCCATCTAAGTAAGAGGGAAGGCCACCAGCCATATCTACTTGGAACAGGAAGGATCAAGGGGAGGATCGACAATTTCTATGTGGTTATGGACAAACATCTCATTCCTTGTGCAGGAACCAGCTCCTTGAGTGCCGTTGATGAACTCTTTAAAATCCACTACGTGTTCAACTTGACGTATGAGGAAGCACTTGTCAACATCTTCACCTTTTTGCAGACTACAGTCTACAACATTGATGTTGGACTTACCAGCGAGTCACCCAGGGTAAAAGAACTGCGTGCAAAGAttttaaactaaatgttaaaGTGTTTTTGTTGCCAAAGCTTGCATGCAAGCAGCACCTCTTTAATTTCTCATTTAAGACTCTCACACATGAATATGTTGTACCTTTGTTTATGTTGGTTTAACTTACATTTAAGatgcattgttaaaaataaaaaaaattcaacttgta
>TCONS_00074052
tttaaaggtttgtggctttttttatttagtgttttatgTCATACAGTTaaatgttgtattatatattaagaTTATACACatcttaaatgttttttcttgTCTCTTACAGGAACATTTCTACGATCCGGAAAAGGGAACAGTCAGCTTCTAATCTAATATCTTCTTCTATAGATAAATCAAGACTTTGGTTTGCTGTTCAATGCTGAAACATCCAACAAGTTGCTTGAGAGATGGGAGACCTCATTTAAGCACAAGATCATCAATGAGGCCAAATCTCTAACTTCAACTGCAGAAATTCGTGGTCTTATCAATTCAACAGAGGGACAAGGATCTGAAAATGGTACAATTTGAGGATTTTGTAGTTTAAatttgctttagtttttttttttttgtatttggggGCCTTAAGAACATATGTGTGCATGTTGTATtgtaatattaatgtcttatttgttttactatcaTTAATTCAGACTGGGATAGTGATATGTCAGCTGTCCTACTCCTGTTGCATCTCCTACCTCCTTCTTCAGGGAGAAAGAGGACTAAGATTAGTCCAACAGAGGCCGTTGAAAGACTTGTGCATTTCCATAAGGTAAAATTCACAAGACTTTAAGtcttttaattgttattttta
>TCONS_00074053
GGCGGACAGCACATGGAGAGCAGTTTTCAAACAGACAATCACGGGAGCCACGAGACAAGTTGGTTAGCAGGAAAATAAAGtgaaAAGCAAATTTGGATTACCAACAACTGCAGATCTTCAAGTTTTTGATGACACGGACACTAATGTAGAAGAGGACATCTTCCACGAGTTAATGGAAAGCAGTCCACATGTATGCTTAACTGTAAGATGCTTGGAAGAAAATATGTCTGCTGGCCTGCCTGAGgtgatttcACCCACAAGATCATCAACAGCCAGCACATGTACTGATACAGTTTCAATCTCTTCTACGGATCATGATGATCCAGAGCAACCAATGCAGAATCAAATGACAAGGGCCAGCAGGTGCTTGATGGTAGATGCTGAAAGGGCAAAACGGATTGTCCAAGATGCTTTGGAAAAGCAATCTGGTGGTGATGAAGTGCTTGATGAATACAAGGCCACAAAAACTTTAAAGCACAGCACTAGACGGCAACTGGTTAATATTGTTGTCAGTCACATGACAGAGATTCATGGGAGAATTCCCACCCGCAAGCAACGGGAGACTTATGCCTTGGGTATTATTTCTCTCTTTCCCAGCCTGAGAGACCCGTTTTCAGCAAAAGGCTATGAACATTTCTACGATCCGGAAAAGGGAACAGGTTTCATTGCCTGGCGCCTTAAAACTTTATCAAGGAAGAACCCAAAACGTGTTCGCTTGGAGGTATCTGAAGTTGGAGGACCAAGTCTCAAACGAAGGATAGACACTGGGCAACAACTTGAAGGGGATGCATGCAGGGAGGCAATTTCTTTTTTTGTCCACACAGCTGATGAAAGTGAAGTTTTGCTAAAA

Function

symbol description
si:dkey-103d23.3 Predicted to enable microtubule binding activity. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-522 Predicted to enable microtubule binding activity. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm.

Ensembl:

ensembl_id ENSDARG00000095057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074051 False 1360 nonsense_mediated_decay 0.42 9 15782048 15789364
TCONS_00074052 False 637 lncRNA 0.33 2 15785246 15786445
TCONS_00074053 True 850 mRNA 0.44 7 15786115 15789526

Neighbor

gene id symbol gene type direction distance location
XLOC_037712 NA coding downstream 3917 15769269 ~ 15778131 (-)
XLOC_037711 CR513782.2 coding downstream 92989 15685746 ~ 15689059 (-)
XLOC_037710 CR513782.3 coding downstream 209885 15570343 ~ 15572163 (-)
XLOC_037709 NA coding downstream 251329 15517348 ~ 15530719 (-)
XLOC_037708 fn1a coding downstream 357409 15362300 ~ 15424639 (-)
XLOC_037714 BX469925.1 coding upstream 108947 15898473 ~ 15912408 (-)
XLOC_037715 crfb4 coding upstream 146690 15936216 ~ 16062938 (-)
XLOC_037716 upp2 coding upstream 308286 16097812 ~ 16109001 (-)
XLOC_037717 myo1b coding upstream 337683 16127209 ~ 16239130 (-)
XLOC_037718 NA coding upstream 986661 16776187 ~ 16777848 (-)
XLOC_037703 NA non-coding downstream 1429266 14303895 ~ 14352782 (-)
XLOC_037719 CT573248.1 non-coding upstream 1033759 16823285 ~ 16824175 (-)
XLOC_037725 NA non-coding upstream 2129594 17919120 ~ 17938305 (-)
XLOC_037728 NA non-coding upstream 2782847 18572373 ~ 18577193 (-)

Expression


Co-expression Network