G1859834


Basic Information

Item Value
gene id G1859834
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35550757 ~ 35552831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2128225
agagggtccATATTAGTGATGCAGAGTAAGAAAATCTAGCAGCTCCAGGTGAAGGGAAAAAAATGTCCTCTACATGAGATGAAACTGTTCACCATTCTCTGAATCGGatgctctctctccatttctcgctctctctttctccacttgccgtcttttccctttttcaccatctcctttctcactttctctcacacaTTTGTCTTGATCTTttttccctcctccctcatctTGTCCTTTCTCCTTTGCTTTCTCTTCTTCTCATCTATTTCCTCCATGTCACCACTGATCTCCAgagttctgtctctcctctgtgagACGCACAAGTTAATTGGAGCAGGTGAACCTGGCAAGAGCACCTGACCTCTCTGTAGAGAgattgaagagagaaagagggggagagagttccACCAGAGATTTCCTGAATAGATTTATTTCAGATGCACACTCTGTTCTCAATTATCTTCTTATACCTCTAGACCCTGAAAACGGAAAGtagcacacacatgcagacacacacactctctctcgctctcactcactcacatgcgcgcacacacacacacaccacgtatGATTGAATCTAACAAGCCAGGACAGGTCTCTAATGTGAGTCTGTGATGTGGGCTGGAGAAGCAGTGAATTGAATGCTGCAGTAAATTCAAAAAAGGCTATAGCTGGTTGGAGACCAAACATCACATGACCGTGGCATTGATGGAGGAGATGAAAgggaggaaagaaagaaaaagcAACACAAGCCATTAGAGAAGCCTCCATTAGAGAAGCCTCCATTAGAGAAGCCGTCATTAAGCCCTATTCAGCTAGTCTCTCTAAATATACCCAGGAGTGATGAGACATGGTGACAGTTATTTAGTTAGGTAGGTAAACTATACTCCCAACGGGGTTCTTCTAAATCAAGATTTGGGATACGTTTGAAGAGTTACGGCCCGCTtcatacacacagggacagctgTGATGCTATCTATAGCACTGTGCTAGCTTtcatctatttaaaaaaaaaatcatttttcatCCCTTTTTTATGCAAGTTATTTTTGTTTCCAGTGGCTACTGCCCACTGGGgacaccacgtcatttcaacgtggataattgggtaatatttggtttacgttgatcaatgagattacaacctattGTATATTCACCCGTTCAATAAGACAgacaaaaatgtattgaatttccaatgtgttatcactatgctttcaaccatctaaaagtaCAACCAAATTCCAATAGAAAAACAattagatttttggtttcaaatGTCTGTCACTGCACTTTCAACCGTTTAAGAGCACAGCAAAGTTCAAATAGGAATATAATGTCAGAtcttttgtttatttatacaatAGATTAAAGTGTTATCGCTGTGCTTCATTTTGTAgaagaaccaaatgacctggattgcagttgagattacattcaaagtacatagtgcaagtgatcaatgctgtttgagattctgcacagattattagagcaattgtgaagatctccacagacttGCGATGACCTATGCATGCTGTTCTGAACATGCACGCTTTATAGAATTACATAGGAAGAGATGTTTAGTTAtggtaacctcaaaatgtggccatggatgtttTAGGGCAATTCgatggtaacggaattac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2128225 True 1652 lncRNA 0.41 2 35550757 35552831

Neighbor

gene id symbol gene type direction distance location
LOC110502653 LOC106613059 coding downstream 49807 35400833 ~ 35500950 (-)
LOC110502652 LOC106577244 coding downstream 207929 35326690 ~ 35342828 (-)
LOC110502651 LOC106613069 coding downstream 328671 35196193 ~ 35222086 (-)
LOC110503106 NA coding downstream 484652 35065346 ~ 35066105 (-)
LOC110502648 LOC106613093 coding downstream 491738 35052896 ~ 35059019 (-)
LOC110502661 golga7b coding upstream 411263 35954220 ~ 36014458 (-)
marveld1 marveld1 coding upstream 1075677 36628508 ~ 36629750 (-)
LOC110502666 LOC106612942 coding upstream 1101320 36654151 ~ 36666245 (-)
LOC110502671 LOC106613549 coding upstream 1239841 36792672 ~ 36794544 (-)
LOC110502672 nkx2-3 coding upstream 1250556 36803387 ~ 36807411 (-)
G1859808 NA non-coding downstream 56855 35439710 ~ 35493902 (-)
G1859806 NA non-coding downstream 114446 35436021 ~ 35436311 (-)
G1859803 NA non-coding downstream 119593 35430898 ~ 35431164 (-)
G1859797 NA non-coding downstream 125030 35424119 ~ 35425727 (-)
G1859795 NA non-coding downstream 126679 35423645 ~ 35424078 (-)
G1859911 NA non-coding upstream 38218 35591049 ~ 35765847 (-)
G1859957 pyroxd2 non-coding upstream 102503 35655334 ~ 35655713 (-)
G1859964 NA non-coding upstream 108428 35661259 ~ 35664833 (-)
G1860010 NA non-coding upstream 180522 35733353 ~ 35735345 (-)
G1860109 NA non-coding upstream 321295 35874126 ~ 35877813 (-)
G1859038 NA other downstream 307168 35243114 ~ 35243589 (-)
G1858636 NA other downstream 581896 34936689 ~ 34968861 (-)
G1858575 LOC106613168 other downstream 709095 34839900 ~ 34841662 (-)
G1858519 NA other downstream 729192 34820776 ~ 34821565 (-)
kcnma1a LOC106613356 other downstream 1362887 34177056 ~ 34469529 (-)
G1860462 NA other upstream 896000 36448831 ~ 36451459 (-)
G1861368 NA other upstream 1782196 37335027 ~ 37335414 (-)
G1862272 NA other upstream 2603918 38156749 ~ 38157209 (-)
G1864033 NA other upstream 3896566 39449397 ~ 39453415 (-)

Expression


Co-expression Network