XLOC_037721 (fbxl3a)


Basic Information

Item Value
gene id XLOC_037721
gene name fbxl3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 16867458 ~ 16877567 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074067
ATACGCACACAGGCTGCCGAGAAAACAACACGTATTAACTGAAATCTGCGCTTATTCGTTTCCAATGCGCGTGCTTTGCTCCACTTCGATGATTTCGGATTCCGGGCCCGGTTGACATTCGGTTGATTTTTCTGGTTTCggtttattttttactgttagcGAGCGAACTGGACGGAGAAAACAGTAACACACAAAACAGTTCCCTCAGatccccaaaaatgaaaaggagGTTGAGCAAAGAGTGTGAGGACAGCACCTCATCATGCGAGGGGCAGACAGTGTCCTACAAGAGACCGAAACAGCCCTCCGAGGACTTTGGAGATCTGCAGTCCAATTGGGTTCGACTTCCCCAGGAGATCCTGCTTCACATCTTTCAGTACCTGCCCCTTCTTGATCGAGCCTTCGCATCACAGGTTTGCCATAACTGGAACCATGCCTTCCATATGCCAGAGCTGTGGAGATGCTTTGAGTTCGAACTCAACCAGCCGGCCACCTCTTACCTGAAGGCCACGCATCCTGACctaataaagcaaataataaagAGGCACTCTAATCACTTGCAGTACGTCAGCTTCAAGGTGGACAGCAGCACAGAATCAGCAGAGACGGCATGTGATATCCTTTCTCAGCTAGTAAACTGCTCGCTCAAGACCCTCGGCCTGATCTCCACTGCACGACCAAGCTTCATGGAGCTACCGAAGTCTCACTTCATCTCCGCACTTACCGTGGTATTTGTCAACTCAAAGTCTCTTTCTTCTCTGAAAATTGACGACACGCCAGTGGACGATCCTTCACTCAAGGTTCTGGTGGCTAATAACAGTGATACACTCAAGCTGTTGAAGATGAGCAGCTGTCCACATGTTTCTCCTGCagGAATTCTGTGTGTTGCTGATCAGTGTCATGGTCTGAGAGAACTGGCGCTGAACTACCACCTCTTGAGCGACGAGCTCCTGTTGGCACTTTCTTCAGAGAAACACGTTCACCTGGAGCATCTGCGCATCGACGTGGTAAGCGAAAACCCCGGCCAGCAGTTCCACACCATCAAGAAGAGCAGCTGGGACGCCATGGTGCGCCATTCACCCAAGTTCAACCTGGTCATGTATTTCTTCCTGTATGAGGATGAGTTTGGGCCCTTTTTCCGGGATGAGATCCCAGTCACGCACCTCTACTTTGGCCGCTCTGTCAGCAAGGAGGTCCTGGGCCGCGTCGGCATGAACTGCCCACGTCTGGTAGAGCTGGTGGTGTGCGCGAATGGTCTGCGGCCACTGGATGAGGAGCTCATTCGTATCGCAGAGCGCTGCCAGTTTCTATCAGCCATTGGACTGGGTGAATGCGAGGTTTCCTGCAGCGCTTTTGTGGAGTTTGTGAAAATGTGTGGCCGTCGGCTCTCTCAGCTGTCTATCATGGAGGAGGTGCTCATTCCTGACCACAAATACGGTCTGGATGAGATCCACTGGGAAGTCTCCAAACACCTAGGACGTGTTTGGTTTCCAGATATGATGCCCACCTGGTGACATTTTGCATTTGAAAAGTCATCAGACGCAGCACGGGACACTCCTAATTTGGTAATACGGACTTTTTTGTTCTCACAGTTACTTTACAGGGTTTGTACATGGATTTGATTGGAGATTGAAATTCCTTCTATGTTAGTAATGAATTTGGACTGTGATGTCAGGAgaatttcacccaaaaattacaataatGGTATTTACTTTCCTATAAgctattgagaaaaaaaagaaaaacaaaatacacttGCTTTTGTTCTATGGAAGTCATACAGGCTTGTGTAATTGCACAAGGATGAGAAAATAAtgacatcatttttatttttgggtggactatccctTTTTCTTGTTGTAACATATATACCAGGCCTATTGAGGTCACGATCTTGTTAAAATCAAAGCTAAaagtatataattatatttaattatattttgcatc
>TCONS_00074068
CGCGCTTGTCTCGACAACAACATCGCCATTTTCAGCTCTGGAAGGGAGGTGGGGACGCCGAAATCTCCCGCGGTACAGCAGAATTCCCTCAGatccccaaaaatgaaaaggagGTTGAGCAAAGAGTGTGAGGACAGCACCTCATCATGCGAGGGGCAGACAGTGTCCTACAAGAGACCGAAACAGCCCTCCGAGGACTTTGGAGATCTGCAGTCCAATTGGGTTCGACTTCCCCAGGAGATCCTGCTTCACATCTTTCAGTACCTGCCCCTTCTTGATCGAGCCTTCGCATCACAGGTTTGCCATAACTGGAACCATGCCTTCCATATGCCAGAGCTGTGGAGATGCTTTGAGTTCGAACTCAACCAGCCGGCCACCTCTTACCTGAAGGCCACGCATCCTGACctaataaagcaaataataaagAGGCACTCTAATCACTTGCAGTACGTCAGCTTCAAGGTGGACAGCAGCACAGAATCAGCAGAGACGGCATGTGATATCCTTTCTCAGCTAGTAAACTGCTCGCTCAAGACCCTCGGCCTGATCTCCACTGCACGACCAAGCTTCATGGAGCTACCGAAGTCTCACTTCATCTCCGCACTTACCGTGGTATTTGTCAACTCAAAGTCTCTTTCTTCTCTGAAAATTGACGACACGCCAGTGGACGATCCTTCACTCAAGGTTCTGGTGGCTAATAACAGTGATACACTCAAGCTGTTGAAGATGAGCAGCTGTCCACATGTTTCTCCTGCagGAATTCTGTGTGTTGCTGATCAGTGTCATGGTCTGAGAGAACTGGCGCTGAACTACCACCTCTTGAGCGACGAGCTCCTGTTGGCACTTTCTTCAGAGAAACACGTTCACCTGGAGCATCTGCGCATCGACGTGGTAAGCGAAAACCCCGGCCAGCAGTTCCACACCATCAAGAAGAGCAGCTGGGACGCCATGGTGCGCCATTCACCCAAGTTCAACCTGGTCATGTATTTCTTCCTGTATGAGGATGAGTTTGGGCCCTTTTTCCGGGATGAGATCCCAGTCACGCACCTCTACTTTGGCCGCTCTGTCAGCAAGGAGGTCCTGGGCCGCGTCGGCATGAACTGCCCACGTCTGGTAGAGCTGGTGGTGTGCGCGAATGGTCTGCGGCCACTGGATGAGGAGCTCATTCGTATCGCAGAGCGCTGCCAGTTTCTATCAGCCATTGGACTGGGTGAATGCGAGGTTTCCTGCAGCGCTTTTGTGGAGTTTGTGAAAATGTGTGGCCGTCGGCTCTCTCAGCTGTCTATCATGGAGGAGGTGCTCATTCCTGACCACAAATACGGTCTGGATGAGATCCACTGGGAAGTCTCCAAACACCTAGGACGTGTTTGGTTTCCAGATATGATGCCCACCTGGTGACATTTTGCATTTGAAAAGTCATCAGACGCAGCACGGGACACTCCTAATTTGGTAATACGGACTTTTTTGTTCTCACAGTTACTTTACAGGGTTTGTACATGGATTTGATTGGAGATTGAAATTCCTTCTATGTTAGTAATGAATTTGGACTGTGATGTCAGGAgaatttcacccaaaaattacaataatGGTATTTACTTTCCTATAAgctattgagaaaaaaaagaaaaacaaaatacacttGCTTTTGTTCTATGGAAGTCATACAGGCTTGTGTAATTGCACAAGGATGAGAAAATAAtgacatcatttttatttttgggtggactatccctTTTTCTTGTTGTAACATATATACCAGGCCTATTGAGGTCACGATCTTGTTAAAATCAAAGCTAAaagtatataattatatttaattatattttgcatc
>TCONS_00074069
atgaaaaggagGTTGAGCAAAGAGTGTGAGGACAGCACCTCATCATGCGAGGGGCAGACAGTGTCCTACAAGAGACCGAAACAGCCCTCCGAGGACTTTGGAGATCTGCAGTCCAATTGGGTTCGACTTCCCCAGGAGATCCTGCTTCACATCTTTCAGTACCTGCCCCTTCTTGATCGAGCCTTCGCATCACAGGTTTGCCATAACTGGAACCATGCCTTCCATATGCCAGAGCTGTGGAGATGCTTTGAGTTCGAACTCAACCAGCCGGCCACCTCTTACCTGAAGGCCACGCATCCTGACctaataaagcaaataataaagAGGCACTCTAATCACTTGCAGTACGTCAGCTTCAAGGTGGACAGCAGCACAGAATCAGCAGAGACGGCATGTGATATCCTTTCTCAGCTAGTAAACTGCTCGCTCAAGACCCTCGGCCTGATCTCCACTGCACGACCAAGCTTCATGGAGCTACCGAAGTCTCACTTCATCTCCGCACTTACCGTGGTATTTGTCAACTCAAAGTCTCTTTCTTCTCTGAAAATTGACGACACGCCAGTGGACGATCCTTCACTCAAGGTTCTGGTGGCTAATAACAGTGATACACTCAAGCTGTTGAAGATGAGCAGCTGTCCACATGTTTCTCCTGCagGAATTCTGTGTGTTGCTGATCAGTGTCATGGTCTGAGAGAACTGGCGCTGAACTACCACCTCTTGAGCGACGAGCTCCTGTTGGCACTTTCTTCAGAGAAACACGTTCACCTGGAGCATCTGCGCATCGACGTGGTAAGCGAAAACCCCGGCCAGCAGTTCCACACCATCAAGAAGAGCAGCTGGGACGCCATGGTGCGCCATTCACCCAAGTTCAACCTGGTCATGTATTTCTTCCTGTATGAGGATGAGTTTGGGCCCTTTTTCCGGGATGAGATCCCAGTCACGCACCTCTACTTTGGCCGCTCTGTCAGCAAGGAGGTCCTGGGCCGCGTCGGCATGAACTGCCCACGTCTGGTAGAGCTGGTGGTGTGCGCGAATGGTCTGCGGCCACTGGATGAGGAGCTCATTCGTATCGCAGAGCGCTGCCAGTTTCTATCAGCCATTGGACTGGGTGAATGCGAGGTTTCCTGCAGCGCTTTTGTGGAGTTTGTGAAAATGTGTGGCCGTCGGCTCTCTCAGCTGTCTATCATGGAGGAGGTGCTCATTCCTGACCACAAATACGGTCTGGATGAGATCCACTGGGAAGTCTCCAAACACCTAGGACGTGTTTGGTTTCCAGATATGATGCCCACCTGGTGAC

Function

symbol description
fbxl3a Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and entrainment of circadian clock by photoperiod. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL3 (F-box and leucine rich repeat protein 3).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030912-5 Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and entrainment of circadian clock by photoperiod. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL3 (F-box and leucine rich repeat protein 3).

Ensembl:

ensembl_id ENSDARG00000103505

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074067 False 1947 mRNA 0.47 5 16867458 16877456
TCONS_00074068 False 1831 mRNA 0.48 5 16867458 16877567
TCONS_00074069 True 1297 mRNA 0.52 4 16867890 16876474

Neighbor

gene id symbol gene type direction distance location
XLOC_037720 RSPH1 coding downstream 13996 16835900 ~ 16853462 (-)
XLOC_037719 CT573248.1 coding downstream 43283 16823285 ~ 16824175 (-)
XLOC_037718 NA coding downstream 89610 16776187 ~ 16777848 (-)
XLOC_037717 myo1b coding downstream 628328 16127209 ~ 16239130 (-)
XLOC_037716 upp2 coding downstream 758457 16097812 ~ 16109001 (-)
XLOC_037722 mycbp2 coding upstream 168308 17045875 ~ 17286330 (-)
XLOC_037723 ftr53 coding upstream 537674 17415241 ~ 17417666 (-)
XLOC_037724 vwa8 coding upstream 663052 17540619 ~ 17783574 (-)
XLOC_037725 NA coding upstream 1041553 17919120 ~ 17938305 (-)
XLOC_037726 epsti1 coding upstream 1284548 18162115 ~ 18215644 (-)
XLOC_037714 BX469925.1 non-coding downstream 955050 15898473 ~ 15912408 (-)
XLOC_037712 NA non-coding downstream 1089327 15769269 ~ 15778131 (-)
XLOC_037711 CR513782.2 non-coding downstream 1178399 15685746 ~ 15689059 (-)
XLOC_037728 NA non-coding upstream 1694806 18572373 ~ 18577193 (-)
XLOC_037729 NA non-coding upstream 1843109 18720676 ~ 18724456 (-)
XLOC_037732 NA non-coding upstream 2030636 18908203 ~ 18911715 (-)
XLOC_037734 NA non-coding upstream 2149585 19027152 ~ 19041027 (-)

Expression


Co-expression Network