G1860621


Basic Information

Item Value
gene id G1860621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 36741096 ~ 36743829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2129060
taaacctgttttgctttgtcattatggggtaatcgTGTGCatattgatgagaaaaaaaatatttaatcacttttagaataaggctctaacataacaaaatgtggaaagagtgaaggggtctgaatggtctctgaatgcactgtatatgtgctgTACGCAATAGCCTGGGGACAAGGTTACCCAAACATAGACGTTAATGATTTGtcaatctgaaccaatcatagacgtctatgtttaacaagtttggacagcacagtacattacagtacagtacattgcaGTACAGAAAAGTAGAgtgtagttcagtacagtatagtaaagaaaataatataataGTTCAGTACAATcctgtacagtagagtagaatatagtagagttaCAGTGGGGcgaaaaagtatttggtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtataattttcatcataggtacacttcaactatgacagacaaaatacttattttccaccataatttgcaaataaattcattaaaaatcctaaaatgtgattttctggattttttttctcattttgtcagtcatagttgaagtgtacatatgatgaaaattacaggcctctcatatttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgcccccactgtatgtacagtacacaaTAGAGCACATTAGAAATGAGTACACTACAATGTAGTGTACCTATTTAGGATACATCACCGTGAAGAGAATGAAATTCATATCATGAAtgatgcatttctgtgtagtataGATCAGGGATCCATGATGGTATTCCATTACGGCAATTCTGTTAACCGGGTGTAAATACACTTCACATATTGTAGTTCAATACCCAAAATAAATTTGGTAATGTCATAGCTGACAACCCATTATTTTTGCAAACATCCGTCAATCTTAATTCGGAGCAGATATTTAATTACTGTGGAATTTCCCTCATGTGAAATGTGCTAGTAAGCCTTGGTTGGTATTTAGGGATCAAGCTATAATGAAAAATGTGTATGTTtgtataatgaacaaaaatataaccgcaacatgtaaagtgttggtcccatgtttcttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2129060 True 1122 lncRNA 0.35 2 36741096 36743829

Neighbor

gene id symbol gene type direction distance location
LOC110502668 LOC106612941 coding upstream 26149 36591861 ~ 36714947 (+)
LOC110502667 LOC105021389 coding upstream 48616 36681895 ~ 36692480 (+)
LOC110502664 avpi1 coding upstream 93300 36643120 ~ 36647796 (+)
LOC110503110 LOC106612973 coding upstream 350039 36264498 ~ 36391057 (+)
sfrp5 sfrp5 coding upstream 578544 36123204 ~ 36166009 (+)
LOC110502670 slc25a28 coding downstream 1148 36744977 ~ 36763280 (+)
LOC110502673 got1 coding downstream 80055 36823884 ~ 36850022 (+)
hpse2 hpse2 coding downstream 144603 36888432 ~ 37002537 (+)
hps1 hps1 coding downstream 263696 37007525 ~ 37029828 (+)
wu:fc17b08 LOC106612867 coding downstream 336136 37079965 ~ 37125397 (+)
G1860576 NA non-coding upstream 194794 36546047 ~ 36546302 (+)
G1860478 NA non-coding upstream 275574 36465211 ~ 36465522 (+)
G1860476 NA non-coding upstream 276976 36463900 ~ 36464120 (+)
G1860460 NA non-coding upstream 293235 36447583 ~ 36447861 (+)
G1860687 NA non-coding downstream 22271 36766100 ~ 36767774 (+)
G1860694 NA non-coding downstream 32846 36776675 ~ 36776937 (+)
G1860702 NA non-coding downstream 46743 36790572 ~ 36790809 (+)
G1860703 NA non-coding downstream 47926 36791755 ~ 36792072 (+)
G1860713 NA non-coding downstream 63595 36807424 ~ 36811369 (+)
G1860679 NA other upstream 16587 36724072 ~ 36724509 (+)
G1859436 NA other upstream 714110 35954168 ~ 36026986 (+)
crtac1b crtac1 other upstream 807884 35879332 ~ 35934997 (+)
G1859175 NA other upstream 1323995 35416512 ~ 35417101 (+)
LOC110502696 LOC106613523 other downstream 1294220 38038007 ~ 38067483 (+)
LOC110502720 mpc1 other downstream 2705574 39449355 ~ 39458454 (+)
G1863919 NA other downstream 2869175 39613004 ~ 39613630 (+)
LOC110502740 LOC106613508 other downstream 3103985 39847791 ~ 39850264 (+)
G1864291 NA other downstream 3106827 39850656 ~ 39853367 (+)

Expression

G1860621 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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G1860621 Expression in each Bioproject

Bar chart with 18 bars.
G1860621 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network