XLOC_037723 (ftr53)


Basic Information

Item Value
gene id XLOC_037723
gene name ftr53
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 17415241 ~ 17417666 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074071
CTCCTTCTCAATTTTTATTCAGTAAAATGGCTGAAGCTCGAATTTTTCAGGATGAGTTCAATTGTCCGGTGTGTTTGGATTTACTTAACGATCCAGTGACCATTCCGTGTGGACACAGTTACTGTAAGAGCTGTATTACTGGCTGCTGGAATCAAGAGGATCAGAGGGGAGTCTACAGCTGCCCTCAGTGCAGACAGGCCTACAGTCCAAGACCTACTTTAGGTAAAAACACCATTCTGGGTGAAATGGTGGAGAAACTGAAGAAGATTAAACTTCCTGCTGACTGTTATGCTGGCCCTGGAGAAGTGCAGTGTGACGTCTGTACTGGAAGAAAATACAAAGCAGTGAAGTCCTGTATGGCTTGTCTAAACTCTTACTGTCAAAGTCATCTTGAACAACATGAGGATTTATTTAgaggaaaaaaacacaatttgaTGGATGCCACCACACAGCTACAGGGGATAGTCTGCCATAAACATGAGAAGATCAAGGAGGTATTTTGCCGCACAGATAATAAGTGTATTTGTGTGCTGTGCACAATGGATGAACATAAAAACCACAACACTGTATCAGCGGCAGCTCAGCGGGCAGAAGAACAGGTATAAACACATGGCACTGGTGAAATAAtgcacttttttattaaaaatgaaaaatactgcATGTTCATCTTTTTTTCAGGAACACTGttgtttaaattcaattaatctttatttctatagcacttttacaatgtagattgtgtcaaagcagctttacaaagacGATTATAGTTAACTCAAAtagtgtcagtctagttttcagtgttgaagttcagtttagttcagttcagtgtggtgtaatattcactgctgagagttcaaacactgaagagcaaatcctcagggcacgaccatttctcctaagGCCAAACGTcctgtgtagagctgcagtctaggcgcaggctggagaaagctggacatccatcatggagaagctgcagacGAGAGAGGTCATCTGTTGGTGTACAGGCTGTTCTTCAGGATCAATGCGAGGACTTGTCACTGGGGTCCTACAAGGATCAGTcttatgctctccactcctccatgaccaccacagcagctgctcaggatacagcctggtccaggattatggaaaccttggaaataataaaaaaagaccaaCATTAGGGcagatgccgttcaaattataaagtcttttgggaagtgttcccagctccagttgccctaaataatgcagactaacaatcttttaagaggatttggatttcacaagcatttgtgttttatgtgtatgctaatgcaaagagatctccctcaGATACTGGGATGCTGTTACTAATACTAACCACTGTTAGTGTGTTAATGATATAAGTAAATTAATAGAGCTTGTAAAATAATCACTAATTTGTTCGTTATTAAATTCCTGAATAAATTAGTATAATGATTCTTATTGAATGAcacttgaaaaataaataaatatatttaaaagtttgTAAGGAAAAACAAAAACGTTGAGCAAAAAAGCTTAAGTACATCATGCTTTTATGATGCATTGTCTTGTCAAGTATTTCTTATGTTTGCTGTTCATTTTTATTCCAAAGAAACACTTaaaaggcttgaaaagaaagttcCAGCAAAGAATCAAGCAGGGAGAAAAAGATCTTCAGAAGCTGAGGGATGCTGTGAAGTCTTATAAGTGCTCTGCCCAGGCAGCAGTAAACTACACTGAGAAGATCTTTAATGAGCTGATAAGTTCCATTATGAGAAGGCGATCTGAGGTCACACTGCTAATCAGAGGTCAGGAAAAGGCTGCAGTGGATCATGCTGAAACACTTATTTTTCAAGTGAAGCAGGATACGGAGACTCTGAGGGAAAGTGACGCTGAGCTGGAGAATCTTTCGCATGTACAAAATCACATTCATTTTCTCCAGGTAACATCTAATAACAGAACTTCTAATGACAAGATTTTCAGCTTTTAAAATGAGCAGCTTAAAGATTATGTTGTCCTAAGCTTTGATAAGTGATGCAAattgttgtttttacaaataattagtcagattctcatttaacctCAGCCATAAAAAGAGCAAATCAATAAAACTATTTTCAGAAAAA
>TCONS_00074072
CTCCTTCTCAATTTTTATTCAGTAAAATGGCTGAAGCTCGAATTTTTCAGGATGAGTTCAATTGTCCGGTGTGTTTGGATTTACTTAACGATCCAGTGACCATTCCGTGTGGACACAGTTACTGTAAGAGCTGTATTACTGGCTGCTGGAATCAAGAGGATCAGAGGGGAGTCTACAGCTGCCCTCAGTGCAGACAGGCCTACAGTCCAAGACCTACTTTAGGTAAAAACACCATTCTGGGTGAAATGGTGGAGAAACTGAAGAAGATTAAACTTCCTGCTGACTGTTATGCTGGCCCTGGAGAAGTGCAGTGTGACGTCTGTACTGGAAGAAAATACAAAGCAGTGAAGTCCTGTATGGCTTGTCTAAACTCTTACTGTCAAAGTCATCTTGAACAACATGAGGATTTATTTAgaggaaaaaaacacaatttgaTGGATGCCACCACACAGCTACAGGGGATAGTCTGCCATAAACATGAGAAGATCAAGGAGGTATTTTGCCGCACAGATAATAAGTGTATTTGTGTGCTGTGCACAATGGATGAACATAAAAACCACAACACTGTATCAGCGGCAGCTCAGCGGGCAGAAGAACAGGTATAAACACATGGCACTGGTGAAATAAtgcacttttttattaaaaatgaaaaatactgcATGTTCATCTTTTTTTCAGGAACACTGttgtttaaattcaattaatctttatttctatagcacttttacaatgtagattgtgtcaaagcagctttacaaagacGATTATAGTTAACTCAAAtagtgtcagtctagttttcagtgttgaagttcagtttagttcagttcagtgtggtgtaatattcactgctgagagttcaaacactgaagagcaaatcctcagggcacgaccatttctcctaagGCCAAACGTcctgtgtagagctgcagtctaggcgcaggctggagaaagctggacatccatcatggagaagctgcagacGAGAGAGGTCATCTGTTGGTGTACAGGCTGTTCTTCAGGATCAATGCGAGGACTTGTCACTGGGGTCCTACAAGGATCAGTcttatgctctccactcctccatgaccaccacagcagctgctcaggatacagcctggtccaggattatggaaaccttggaaataataaaaaaagaccaaCATTAGGGcagatgccgttcaaattataaagtcttttgggaagtgttcccagctccagttgccctaaataatgcagactaacaatcttttaagaggatttggatttcacaagcatttgtgttttatgtgtatgctaatgcaaagaggagctccctcaGATACTGGGATGCTGTTACTAATACTAACCACTGTTAGTGTGTTAATGATATAAGTAAATTAATAGAGCTTGTAAAATAATCACTAATTTGTTCGTTATTAAATTCCTGAATAAATTAGTATAATGATTCTTATTGAATGAcacttgaaaaataaataaatatatttaaaagtttgTAAGGAAAAACAAAAACGTTGAGCAAAAAAGCTTAAGTACATCATGCTTTTATGATGCATTGTCTTGTCAAGTATTTCTTATGTTTGCTGTTCATTTTTATTCCAAAGAAACACTTaaaaggcttgaaaagaaagttcCAGCAAAGAATCAAGCAGGGAGAAAAAGATCTTCAGAAGCTGAGGGATGCTGTGAAGTCTTATAAGTGCTCTGCCCAGGCAGCAGTAAACTACACTGAGAAGATCTTTAATGAGCTGATAAGTTCCATTATGAGAAGGCGATCTGAGGTCACACTGCTAATCAGAGGTCAGGAAAAGGCTGCAGTGGATCATGCTGAAACACTTATTTTTCAAGTGAAGCAGGATACGGAGACTCTGAGGGAAAGTGACGCTGAGCTGGAGAATCTTTCGCATGTACAAAATCACATTCATTTTCTCCAGGTAACATCTAATAACAGAACTTCTAATGACAAGATTTTCAGCTTTTAAAATGAGCAGCTTAAAGATTATGTTGTCCTAAGCTTTGATAAGTGATGCAAattgttgtttttacaaataattagtcagattctcatttaacctCAGCCATAAAAAGAGCAAATCAATAAAACTATTTTC
>TCONS_00074073
GAAACTTCTGAAACTGTAATCTTGCTGTCTGTTTGTGTCTCCTTCTCAATTTTTATTCAGTAAAATGGCTGAAGCTCGAATTTTTCAGGATGAGTTCAATTGTCCGGTGTGTTTGGATTTACTTAACGATCCAGTGACCATTCCGTGTGGACACAGTTACTGTAAGAGCTGTATTACTGGCTGCTGGAATCAAGAGGATCAGAGGGGAGTCTACAGCTGCCCTCAGTGCAGACAGGCCTACAGTCCAAGACCTACTTTAGGTAAAAACACCATTCTGGGTGAAATGGTGGAGAAACTGAAGAAGATTAAACTTCCTGCTGACTGTTATGCTGGCCCTGGAGAAGTGCAGTGTGACGTCTGTACTGGAAGAAAATACAAAGCAGTGAAGTCCTGTATGGCTTGTCTAAACTCTTACTGTCAAAGTCATCTTGAACAACATGAGGATTTATTTAgaggaaaaaaacacaatttgaTGGATGCCACCACACAGCTACAGGGGATAGTCTGCCATAAACATGAGAAGATCAAGGAGGTATTTTGCCGCACAGATAATAAGTGTATTTGTGTGCTGTGCACAATGGATGAACATAAAAACCACAACACTGTATCAGCGGCAGCTCAGCGGGCAGAAGAACAGAAACACTTaaaaggcttgaaaagaaagttcCAGCAAAGAATCAAGCAGGGAGAAAAAGATCTTCAGAAGCTGAGGGATGCTGTGAAGTCTTATAAGTGCTCTGCCCAGGCAGCAGTAAACTACACTGAGAAGATCTTTAATGAGCTGATAAGTTCCATTATGAGAAGGCGATCTGAGGTCACACTGCTAATCAGAGGTCAGGAAAAGGCTGCAGTGGATCATGCTGAAACACTTATTTTTCAAGTGAAGCAGGATACGGAGACTCTGAGGGAAAGTGACGCTGAGCTGGAGAATCTTTCGCATGTACAAAATCACATTCATTTTCTCCAG

Function

symbol description
ftr53 Predicted to enable zinc ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-515 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDARG00000041220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074071 False 2114 nonsense_mediated_decay 0.39 3 17415241 17417628
TCONS_00074072 False 2108 mRNA 0.39 3 17415248 17417628
TCONS_00074073 True 967 mRNA 0.43 3 17415425 17417666

Neighbor

gene id symbol gene type direction distance location
XLOC_037722 mycbp2 coding downstream 128911 17045875 ~ 17286330 (-)
XLOC_037721 fbxl3a coding downstream 537674 16867458 ~ 16877567 (-)
XLOC_037720 RSPH1 coding downstream 561779 16835900 ~ 16853462 (-)
XLOC_037719 CT573248.1 coding downstream 591066 16823285 ~ 16824175 (-)
XLOC_037718 NA coding downstream 637393 16776187 ~ 16777848 (-)
XLOC_037724 vwa8 coding upstream 122953 17540619 ~ 17783574 (-)
XLOC_037725 NA coding upstream 501454 17919120 ~ 17938305 (-)
XLOC_037726 epsti1 coding upstream 744449 18162115 ~ 18215644 (-)
XLOC_037727 enox1 coding upstream 892562 18310228 ~ 18568927 (-)
XLOC_037728 NA coding upstream 1154707 18572373 ~ 18577193 (-)
XLOC_037714 BX469925.1 non-coding downstream 1502833 15898473 ~ 15912408 (-)
XLOC_037712 NA non-coding downstream 1637110 15769269 ~ 15778131 (-)
XLOC_037711 CR513782.2 non-coding downstream 1726182 15685746 ~ 15689059 (-)
XLOC_037729 NA non-coding upstream 1303010 18720676 ~ 18724456 (-)
XLOC_037732 NA non-coding upstream 1490537 18908203 ~ 18911715 (-)
XLOC_037734 NA non-coding upstream 1609486 19027152 ~ 19041027 (-)

Expression


Co-expression Network