G1862643 (LOC106595915)


Basic Information

Item Value
gene id G1862643
gene name LOC106595915
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 38359133 ~ 38362865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2131343
aagtgacagtttaattatgagtaaagatatctggtacaacgtatacgggccatttcattcggttcttaaggaaccagcagaaaaagaagcgcagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagcagtaggctggtcacctgcataagaaatagcacttccttacaaaTCCCTCTCTTCACGTCTCCCCAGAGACGTGACACAACCTAACTATATCCAGACACAACAAGAAAACTTTTCCCAGAAGGAAAAGTTTTGTGATTCCCTCTCTTCACATCTCCTAAGAGATGTGACATAAACTAGGCTAACAATTACAAAGTTTAAAATACCTTCATGTTCTCCATTCGATCCCACTATGTACTAGATTGGCTACCAGCCACCTAGGAACTTGCAACCCTCATGCCAAAAGAGAACAACAGCTCATtgaaaaacagaacaaaagaaaattatgtgaaatttaagcccccctttttgacacccactagggtgtcactcattatcccttatttcagcagtcatagcatttcatgaaaagaaaaacaaaacctaGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAACGGAGGAGACCAGGGTTTTATATTTACCAAAGGCACTCATCCAGGAGTCCCACATTGAGGTATCAATCCCAGAATGAGATTTCATTTTACCATTAAGAGTCCTCAAACCTTCTAGGGCTACGGTCAAGCTACCATCGGAGGCTGTGTTATTAGGGATgaaaatacaacactgttcaccaaACATAGTGCAAGCTCCACCTTTCTCTGCCGGTAGCATATCCACTGCAATGCGATTCTGGAATGTATTCTATCCACATTTTTATTAACAGTGCACCACCAACAAATGGAGGACTCAAACCCAGCTGCCACCTGATCCACCAACTTGTATTCGTCAGGAACTCCCCTTGGGACTCCAATGGCGTCTATGTACGTCGGATCACCACTAGATGGGGTGGTGGCACGCCTGGAACGTCCCCTGGATATTCAGGGTTCACCCTCTGGACCCTAAGGATGAGGTCTCCAGCCTCTGTAGGGTAGATAGAAACAGGCAAAAGGAGAGTAACAAGTGCACAGCTTCCAGTAGTATTGGAGGGTAATTTATCAAACAGGACAGTGTTGCCACACCACCACCTCACATCTGCTCTGGATATTGGACTGAAACTCCCAACAATGTTGATTGTATCCAGACACCAATTCCCAGGAACCTGTCCCACATTAGTACCGCCTCCCGTCATTTTGACACAGGTGAAATGTGCCCTGGCAACCTTGTTGGAAAACAATGGTTTCCTAGCAGTAGATTTAGTCATGGGATAGACAGCATCCCAGGCAGAGCAATTACAACTGGGGTTATCCGTAGTCATTAATGGGATTAAACATGTTAGAGTCACATCTGTAACAGACTTCTTAAAACACGGTATGAtgcaagcagcacaacacatcaataatacAAATACAAGAATTAGGGTCAGAAATCCAGTAACCACCATACCAGTGTACTTACCAAACCAGGCTCCCAACCAAAAGAACAGTCCAGACTCCTCCACCCCCGCCATGGTCCTCATCTCAGCAGATAGTGCACCAAGCCCATTAAAGGCCTTAGCTATACCACCATCTGGAGTGGTGTTATTAGGAATATACGTGCAACATTGTTCACCGAACATCTTGCAGACTGTCTGGCAACCCTAGATGTGGCCTCAAGctgttcagacagaccagtgaGTGCATCACGGGGGTAATTCACAAAACGCTGTTGATTATAGTAGATATAACTGATCCATGCAGTCTGTCTAGCATCCACTATGGCTGGACCTATAATAGGTAGTAAGTGCCAGAGTCCATCATTCCTACCCAAGGCCTGAAACTCATGAGGAACCCCCACTGGCACTCCCAACAGGTTAGTGTGTATGTCAACTACATCCTCTGTCCATGGAGCACTACATCTATGTCTCCCATGGGATGGAATGTTTTCAGGTCCCCTGGATACAAAACCCAACAGCTGTTCAGAAGTAACATCAACAATGGTCAGTGTAATTATCAAACTGGTCAGAGCACACGTACCTTGCCAGTCTCCTCTAAGAATGGGTCTCAGTACTCTTTTGGGTCCACATATCCACCACACATCAGCCAGACCACTAGTTTGGTTTAGGCCTGTAACTGGCCAAGTGGCATAAATGGTTATGTTACTGCTGCAATCAGCTTCAGGCAATCTCCCATAGTCCATGCCACTACCTGTACCCGTGATGCAACTGTAATTGCCCCCATATGCCTTAACACCCCAAGGGGCCCGATGAGGAGGTACTGTAGGAAACACAAGGCTCAAAGAGGAACAGAGGGTTGAATTGGGCTgaacctggtaaaaacctctcagaatacacaaccacccttctccttctcctataGCAAATGGGTGTGTAGCCAGAACAAGTCTAGCATGACTACAAATAGTGCAGTCCTTTCTTCTCAGGGTTTTAGCTGTGCACCTCATATAAGACAGCCACAAATTGTCCCTACCATCAAAACCAGTCTCAGTGCCTAATTGATCAATAGCTGTGTAGTCTCTAACATTAATTACCTGAATAGGATTTTTTAACACAGTGGTGGTAGGTGGCAGGTTCGGTCCAGGGGTGGTAGAGGAGTGTGTCTGGCCCTGGTTCGTCTGGGACCTCTGGTTTTGGCAGCTCCCTAATAGAAAACACATCCATCGTGTCTGTCCCGGTCCTTTGTAGTCCGAGGGTGTAAGTGCCTGCATCAGAGAgcttaatagttttgatggttaGTAGGATTTCATCACCTTTACAAAGTTCAACAGTGCTCCCAGGTTTTCCCCATATgatggaaaacctatccacctttgtgggatcccctatgctataagaataccctcttctccaatcctagaattgtcccaagttggttatcatgtaatccccatatggacaccctcccccattacacaggtacactgacactcctgtaaagccccaccctctcccagagaacacatcactagcaagagccagacacatcttcacttctatgaacaaaaacaggggtgacaggacagggagggttacttcattcgagagatggcccccggaattctgttaattccagttctcctctcgaacactgttTTTTGTTCGACAGTGTCAGTGTCCTACCCTTCCCC

Function

NR:

description
uncharacterized protein LOC110527674

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2131343 True 3683 lncRNA 0.46 2 38359133 38362865

Neighbor

gene id symbol gene type direction distance location
LOC110503074 NA coding downstream 55067 38287806 ~ 38304066 (-)
LOC110502701 LOC106612630 coding downstream 87727 38192185 ~ 38271406 (-)
LOC110502699 LOC106612641 coding downstream 171462 38177481 ~ 38187671 (-)
LOC110502698 LOC106612663 coding downstream 258541 38082120 ~ 38100592 (-)
LOC110502689 LOC106612792 coding downstream 666937 37682673 ~ 37692196 (-)
LOC110502706 fbx9 coding upstream 46018 38408883 ~ 38416607 (-)
LOC110502709 LOC106589793 coding upstream 76134 38438531 ~ 38451320 (-)
LOC110502710 LOC106612554 coding upstream 114258 38477123 ~ 38533846 (-)
mcph1 mcph1 coding upstream 173269 38536134 ~ 38585926 (-)
myom2b LOC106612511 coding upstream 996198 39359063 ~ 39384164 (-)
G1862557 LOC106612605 non-coding downstream 22894 38329248 ~ 38336239 (-)
G1862629 NA non-coding downstream 45686 38312804 ~ 38313447 (-)
G1862611 NA non-coding downstream 76447 38282431 ~ 38282686 (-)
G1862608 NA non-coding downstream 78223 38280668 ~ 38280910 (-)
G1862607 NA non-coding downstream 79118 38279777 ~ 38280015 (-)
G1862552 elovl2 non-coding upstream 33189 38396054 ~ 38402073 (-)
G1862662 NA non-coding upstream 43022 38405887 ~ 38408243 (-)
G1862668 NA non-coding upstream 65525 38428390 ~ 38429346 (-)
G1862672 NA non-coding upstream 68350 38431215 ~ 38431430 (-)
G1862675 NA non-coding upstream 69904 38432769 ~ 38433782 (-)
G1862272 NA other downstream 201924 38156749 ~ 38157209 (-)
G1861368 NA other downstream 1023719 37335027 ~ 37335414 (-)
G1860462 NA other downstream 1907674 36448831 ~ 36451459 (-)
LOC110502661 golga7b other downstream 2399928 35954220 ~ 36014458 (-)
G1859038 NA other downstream 3115544 35243114 ~ 35243589 (-)
G1864033 NA other upstream 1086532 39449397 ~ 39453415 (-)
srsf2a LOC106612293 other upstream 1816964 40179809 ~ 40185223 (-)
G1868010 NA other upstream 4552541 42915406 ~ 42978144 (-)
G1868940 LOC106611807 other upstream 5124003 43486868 ~ 43501433 (-)
G1872165 NA other upstream 7665055 46027920 ~ 46029807 (-)

Expression


Co-expression Network