G1864211


Basic Information

Item Value
gene id G1864211
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 39714695 ~ 39716578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2133024
aagtaacataacaaaatatggaaaaagtcaaggggtctgaatactttctgaaggcattgtaaatATCAAGTGAAATGATACTGTTGTTAAGGAGTCAAGTGCTGAATAGTGCCTATAAAAGTACTTTGCAGGTATCCTTCATGCATCATGTAGATGTTCTTATTCATACTTAGTGCTCCAGTGGGAAAATAGCCTTAACTGTACATAGCATTTTACCCCCAATGTTAAATGTAAGTGAAGGGTTAAAGCAAAGTGAAAAggcaagtgagagagagtgagggcacTGGAAATTCAAAACAAGCAGACATGCTTTGATTTAGTGAGAGAGGGACACTGCAAGAATGTCAACACCTATAAAAAGGACAATGGTAACATGACGTCAGCTCAGTCCACAgggtatacagtggggagaacgtATTtaataacctgcaaaatcggcagtgtttcctacttacaaagcatgtggaggtctgtaatttctatcataggtacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgcattttattgcatgacataagtatttgatacatcagaaaagcagaacttaatatttggtacagaaaccttttttTGCAATCATACATTTCCTTATAGATGCCAACGAGAGCAtaaaggtcgcagtggtgggtagtatatggggctttggaggTAAAATGGATAGCACTGTGATAGATTATtcagttttctgagtagagtgttgggggctattttgtaaatggatcggtaggatagacagttttacgaaggtatgtttagcagcatgagtgaaggaggctttgttgcgaaatagaaagccgagtCTTGTTTtaattttcgattggagatgcttaatgtgagtctggaaggaaagtttacagtcttaccagacacctaggtatttgtagttgtccacatattctagatcagaactgtccagagtagtgatgctagtcgggcgggagggtgcggaaaacatttggttgaagAACAcacacttagttttactagcatttaagagcagttggaggccacagcaGGAGGGTTGTATtccgttgaagctcgtttggaggtttgttagcagtgtccaaagaagggccagaagtttacagaatggtgtcatctgcgtagaggtggatcagagaatcaccagcagcaagagcgacagttctatttttgtttcatcagaccagaggacgtttcttCAAAAAAGTAtgctctttgtccccatgtgcagttgcaaaccatagtctggcttttggATGGTGggtttagagcagtggcttcttccttgctgagccggcctttcaggttgtcttGTCTAtgtcttgttttactgtggatatagatacttttgtacccgtttcctccagcatcttcacaagggcctttgctgttgttctgggatcgatttgcacttttcgcaccaaagtacattcatctctaggagacagaacgagtctccatactgagcggtatgacggctgtggtcccatggtgttcatacttacgtactattgtttgtacagatgaatgtggcaccttcaggcatttggaaattgctcccaaggatgaaccagacttgtggaggtctacattttttttttcctgaggtctgatttattttgattttcccatgatatgaAGCAaatagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaataagcctatcagaagcttctaaagccatgacatcattttctgaaattttccaagtgGTTTAAtttcacagtcaacttagtgtacgtaaacttctaacccactggaattgtgaattttaagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2133024 True 1884 lncRNA 0.40 1 39714695 39716578

Neighbor

gene id symbol gene type direction distance location
tacr2 LOC106612452 coding downstream 48669 39660915 ~ 39666026 (-)
irf1a LOC106612476 coding downstream 196932 39514302 ~ 39517763 (-)
LOC110502717 LOC106612488 coding downstream 241062 39457772 ~ 39473633 (-)
myom2b LOC106612511 coding downstream 330531 39359063 ~ 39384164 (-)
mcph1 mcph1 coding downstream 1128769 38536134 ~ 38585926 (-)
hnrnph3 hnrh3 coding upstream 50213 39766791 ~ 39772600 (-)
dna2 dna2 coding upstream 60804 39777382 ~ 39811785 (-)
LOC110502743 LOC106612385 coding upstream 230906 39947484 ~ 39958097 (-)
LOC110502744 LOC106612365 coding upstream 291805 40008383 ~ 40072508 (-)
sfxn2 sfxn2 coding upstream 379518 40096096 ~ 40102224 (-)
G1864139 NA non-coding downstream 93603 39620849 ~ 39621092 (-)
G1864138 NA non-coding downstream 94234 39620231 ~ 39620461 (-)
G1864136 NA non-coding downstream 95176 39619234 ~ 39619519 (-)
G1864135 NA non-coding downstream 99319 39615092 ~ 39615376 (-)
G1864134 NA non-coding downstream 103235 39610571 ~ 39611460 (-)
G1865201 NA non-coding upstream 325983 40042561 ~ 40042776 (-)
G1865202 NA non-coding upstream 326225 40042803 ~ 40043042 (-)
G1865206 NA non-coding upstream 331694 40048272 ~ 40049044 (-)
G1865210 NA non-coding upstream 338613 40055191 ~ 40055420 (-)
G1865214 NA non-coding upstream 344392 40060970 ~ 40061456 (-)
G1864033 NA other downstream 261280 39449397 ~ 39453415 (-)
G1862272 NA other downstream 1557486 38156749 ~ 38157209 (-)
G1861368 NA other downstream 2379281 37335027 ~ 37335414 (-)
G1860462 NA other downstream 3263236 36448831 ~ 36451459 (-)
LOC110502661 golga7b other downstream 3755490 35954220 ~ 36014458 (-)
srsf2a LOC106612293 other upstream 463251 40179809 ~ 40185223 (-)
G1868010 NA other upstream 3198828 42915406 ~ 42978144 (-)
G1868940 LOC106611807 other upstream 3770290 43486868 ~ 43501433 (-)
G1872165 NA other upstream 6311342 46027920 ~ 46029807 (-)
G1872556 NA other upstream 7080657 46797235 ~ 46797650 (-)

Expression


Co-expression Network