Gene
RNA
| Item | Value |
|---|---|
| gene id | G1871408 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 44586052 ~ 44586638 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: basic salivary proline-rich protein 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2140922 | False | 490 | lncRNA | 0.45 | 2 | 44586052 | 44586638 |
| TU2140923 | True | 430 | lncRNA | 0.46 | 2 | 44586052 | 44586638 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100301649 | LOC106611671 | coding | downstream | 77523 | 44300058 ~ 44508529 (-) |
| LOC110502816 | LOC106611732 | coding | downstream | 575103 | 44008133 ~ 44010949 (-) |
| LOC110502811 | dusp13 | coding | downstream | 683499 | 43877678 ~ 43902553 (-) |
| dusp29 | LOC106611804 | coding | downstream | 710171 | 43873977 ~ 43875881 (-) |
| LOC110502805 | LOC106611817 | coding | downstream | 1152313 | 43408822 ~ 43433739 (-) |
| LOC110502821 | LOC106611643 | coding | upstream | 70320 | 44656958 ~ 44687275 (-) |
| LOC110502822 | LOC106611598 | coding | upstream | 107437 | 44694075 ~ 44736553 (-) |
| snx5 | LOC106611592 | coding | upstream | 171897 | 44758535 ~ 44773318 (-) |
| si:dkey-76k16.6 | LOC106613470 | coding | upstream | 191266 | 44777904 ~ 44789403 (-) |
| LOC100136752 | LOC100136752 | coding | upstream | 212149 | 44798787 ~ 44801437 (-) |
| G1871400 | NA | non-coding | downstream | 16975 | 44559461 ~ 44569077 (-) |
| G1871399 | NA | non-coding | downstream | 21536 | 44559623 ~ 44564516 (-) |
| G1871394 | NA | non-coding | downstream | 34048 | 44549880 ~ 44552004 (-) |
| G1871390 | NA | non-coding | downstream | 44477 | 44541117 ~ 44541575 (-) |
| LOC110503120 | LOC106611651 | non-coding | downstream | 63642 | 44521978 ~ 44646297 (-) |
| G1871366 | NA | non-coding | upstream | 35179 | 44621817 ~ 44626347 (-) |
| G1871471 | NA | non-coding | upstream | 68433 | 44655071 ~ 44655308 (-) |
| G1871490 | NA | non-coding | upstream | 156043 | 44742681 ~ 44742896 (-) |
| G1871497 | NA | non-coding | upstream | 166085 | 44752723 ~ 44752975 (-) |
| G1871501 | NA | non-coding | upstream | 167734 | 44754372 ~ 44754608 (-) |
| G1868940 | LOC106611807 | other | downstream | 1084619 | 43486868 ~ 43501433 (-) |
| G1868010 | NA | other | downstream | 1607908 | 42915406 ~ 42978144 (-) |
| srsf2a | LOC106612293 | other | downstream | 4400840 | 40179809 ~ 40185223 (-) |
| G1864033 | NA | other | downstream | 5132637 | 39449397 ~ 39453415 (-) |
| G1862272 | NA | other | downstream | 6428843 | 38156749 ~ 38157209 (-) |
| G1872165 | NA | other | upstream | 1441282 | 46027920 ~ 46029807 (-) |
| G1872556 | NA | other | upstream | 2210597 | 46797235 ~ 46797650 (-) |
| G1873030 | NA | other | upstream | 2354648 | 46941286 ~ 46942457 (-) |
| G1873043 | NA | other | upstream | 2373984 | 46960622 ~ 46961653 (-) |
| LOC110502870 | PHF5A | other | upstream | 2481270 | 47067897 ~ 47079813 (-) |
