G1871726


Basic Information

Item Value
gene id G1871726
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 45164856 ~ 45179716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2141286
TTTCAACACAGGTCCTCCTTCTCTTCATGTAAGCCTTCTGCTTTGCCCATGCAGCCACCACATGGTAGACTTAGCGCAGTTCCTTCACATGCACATACTGTCTGTATGTAAGTCCTTTACTCAGTGAAGaagacacactttataccacccTGACAGACTTTATACCAATCTGAAAcgctttataccactctgaaacactttataccactctgaaaccctttataccactctgacacactttataccactctgacacactttataccactctgacacactttataccactctgaaaccctttataccactctgaaaccctttataccaTTCTGAAACCCCTAATACCACTCTGAcatactttataccactctgaaaccctttataccactctgaaaccctttataccactcGGACACACTGAAACCATATATCCaactctgacacactttatacactctgaaaccatttataccactccaaacctctttataccactctgacatactttataccactctgaaaccctttataccactctgacacactttataccactctgaaaccctttataccactctgacacactttataccactctgacacactttataccactctgaaaccttttataccactctgacacactttataccactctgacacactttataaCACTCttacacactttataccactctgaaaccatttataccactctgacatactgtataccactctgacacactttataccactctgaaaccatttataccactctgaaaccatttatagcactctgacacactttataccactctgaaaccatttataccactctgacacactttataccactctgacacactttataccactctgaaaccctttctaccactctgacacactggaacCATATATCCTACTCTGAAACCCTTTATGccactctgaaaccctttataccactctgacatagtttttaccactctgaaaccctttataccactctAAAACCCTTtctaccactctgacacactgaaacCATATATCccactctgaaaccctttatGCCACTCTGAAACCCctaataccactctgaaaccctttataccactctgaaaccctttataccactctgaaaccctttataccactctgacacactgaaacCATATATCCaactctgacacactttatacagtctgaaaccatttataccactccaaacctctttataccactctgacatactttataccactctgaaaccatttataccactctgacacactttataccactctgaaactatttataccactctgacatactttataccactctgaaactatttataccactctgaaaccatttataccactctgaaaccatttataccactctgacatactttataccactctgaaactatttataccactctgaaaccatttataccactctgacatactttataccactctgacatactttataccactctgacacactttataccactctgaaactatttataccactctgaaaccatttataccactctgacatactttataccactctgaaaccatttataccactctgacacactttataccactctgacacactttataccactctgaaactatttataccactctgaaaccatttataccactctgacatactttataccactctgaaaccatttataccactctgacacactttataccactctgaaactatTTATACCACTCCAAACctctttataccactctgacatactttataccactctgaaaccctttataccactctgacacactttataccactctgacacactttataccactctgaaaccctttataccactctgacacactttataccactctgaaaccctttataccactctgacactctttataccactctgacacactttataccactctgaaaccttttataccactctgacacactttataccactctgacatacTTTATACCActctgaaacactttataccactctgaaaccatttataccactctgaaaccatttataccactctgaaaccatttatacctCTCTGAAACCAttaataccactctgaaaccatttataccactctggaaccctttataccactctgccacactgaaaccctttataccactctgatatactttataccactctgacacactttataccactctcacacactttataccactctcacacactttataccactccgAAACACTGAAACCCTCTATACCACTCCGACATACTTTAttccactctgacacactttgcaccactctgacacactttataccactctgaaaccctttataccactctgaaaccatgAATACCACTCTGACACCACTCTGATACCACAGTTGACAAGCTAAATGCATTCTTTGTTTTATGCATCTACTCCATGTGTGTCTCTGCAGACCTCCTAGCTGTGTGTGATTATCTTTGATGCGTCATGCTGTGGTTTATAATgcacattagacacacacacacacacttttgttgGATATTGTGTTCCTCTCAAGGTttttgtctccatctctctgctttGTGATTGCTGAGCGGTGTTAGCTAGTCTACAGTAAATAcaccgtctccatctctctgctttGTGATTGCTGAGCGGTGTTAGCTAGTCTACAGTAAATACatcgtctccatctctctgctttGTGAT
>TU2141289
TTTCAACACAGGTCCTCCTTCTCTTCATGTAAGCCTTCTGCTTTGCCCATGCAGCCACCACATGGTAGACTTAGCGCAGTTCCTTCACATGCACATACTGTCTGTATGTAAGTCCTTTACTCAGTGAAGaagacacactttataccacccTGACAGACTTTATACCAATCTGAAAcgctttataccactctgaaacactttataccactctgaaaccctttataccactctgacacactttataccactctgacacactttataccactctgacacactttataccactctgaaaccctttataccactctgaaaccctttataccaTTCTGAAACCCCTAATACCACTCTGAcatactttataccactctgaaaccctttataccactctgaaaccctttataccactctgaaaccctttataccactctgacacactgaaacCATATATCCaactctgacacactttatacagtctgaaaccatttataccactccaaacctctttataccactctgacatactttataccactctgaaaccatttataccactctgacacactttataccactctgaaaccatttataccactccaaacctctttataccactctgaaaccctttataccactctgaaaccctttataccactctgacacactttataccactctgaaaccttttataccactctgacacactttataccactcttacacactttataccactctgaaaccatttataccactctgacatgctttataccactctgaaacactttataccactctgaaaacatttataccactctgaaaccatttataccactctgacacactttataccactctgaaaccatttatacgactctgacacactttataccactctgaaacactttataccactctgaaaccctcTATACCACTcggacacactttataccactctgacatactttataccactctgaaacactGAAaacctttataccactctgaaaacctttataccactctgaaaccctttataccactctgaaacactGAAaacctttataccactctgacacactttataccattctgaaaccatttataccactctgaaaccctttataccactctgaaaccatttataccactctgaaaccatttataccactctgaaaccctttataccactctgaaaccatttataccactctgaaaccatttataccactctgaaaccctttataccactctgaaaccatttataccactctgaaaccatttataccactctgaaaccatttatacctctctgaaaccatttataccactctgaaaccatttataccactctggaaccatttataccactctgCCACActgaaaccctttataccactctgatatactttataccactctgacacactttataccactctaaCACCCTTAATAACACTCTGAAAGACCgaaaccctttataccactctgaaaccctttataccactctgaaaccatttatactactctgaaaccatttataccactctgaaaccatttataccactctgaaaccttttataccactctgacacactttataccactctgacacactttataccactcttacacactttataccactctgaaaccatttataccactctgacatactttataccactctgaaacactttataccactctgaaaacatTTATACCACTcggacacactttataccactctgacatacTTTATACCACTctgaaaccctttataccactctgaaacactGAAaacctttataccactctgacacactttataccattctgaaaccatttataccactctgaaaccctttataccactctgacacactataccactctaacACCCTTTATAACACTCTGAAAGACCgaaaccctttataccactctgaaaccctttataccactctgaaaccatttatactactctgaaaccatttataccactctgaaaccatttataccactctgaaacactttataccactctgaaaccatttataccactctgaaaccatttataccactctgaaaccatttatacctCTCTGAAACCAttaataccactctgaaaccatttataccactctggaaccctttataccactctgccacactgaaaccctttataccactctgatatactttataccactctgacacactttataccactctcacacactttataccactctcacacactttataccactccgAAACACTGAAACCCTCTATACCACTCCGACATACTTTAttccactctgacacactttgcaccactctgacacactttataccactctgaaaccctttataccactctgaaaccatgAATACCACTCTGACACCACTCTGATACCACAGTTGACAAGCTAAATGCATTCTTTGTTTTATGCATCTACTCCATGTGTGTCTCTGCAGACCTCCTAGCTGTGTGTGATTATCTTTGATGCGTCATGCTGTGGTTTATAATgcacattagacacacacacacacacttttgttgGATATTGTGTTCCTCTCAAGGTttttgtctccatctctctgctttGTGATTGCTGAGCGGTGTTAGCTAGTCTACAGTAAATAcaccgtctccatctctctgctttGTGATTGCTGAGCGGTGTTAGCTAGTCTACAGTAAATACatcgtctccatctctctgctttGTGAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107395943

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2141286 False 2732 lncRNA 0.39 4 45164856 45179716
TU2141289 True 2735 lncRNA 0.39 6 45164856 45179716

Neighbor

gene id symbol gene type direction distance location
LOC110502826 mad2l1bp coding downstream 354486 44806316 ~ 44810370 (-)
LOC100136752 LOC100136752 coding downstream 363419 44798787 ~ 44801437 (-)
si:dkey-76k16.6 LOC106613470 coding downstream 375453 44777904 ~ 44789403 (-)
snx5 LOC106611592 coding downstream 391538 44758535 ~ 44773318 (-)
LOC110502822 LOC106611598 coding downstream 428303 44694075 ~ 44736553 (-)
LOC110502833 LOC106609168 coding upstream 998050 46177766 ~ 46183719 (-)
LOC110511512 LOC106609168 coding upstream 1007089 46186805 ~ 46189644 (-)
LOC110502836 LOC106609168 coding upstream 1013034 46192750 ~ 46195831 (-)
LOC110502837 LOC106609157 coding upstream 1154465 46334181 ~ 46363462 (-)
LOC110502838 LOC106609148 coding upstream 1184512 46364228 ~ 46367315 (-)
G1871665 NA non-coding downstream 120625 45039821 ~ 45044231 (-)
G1871641 NA non-coding downstream 180657 44983840 ~ 44984199 (-)
G1871639 NA non-coding downstream 183721 44979344 ~ 44981135 (-)
G1871635 NA non-coding downstream 196144 44968403 ~ 44968712 (-)
G1871633 NA non-coding downstream 198508 44966136 ~ 44966348 (-)
G1871731 NA non-coding upstream 1913 45181629 ~ 45183272 (-)
G1871739 NA non-coding upstream 14616 45194332 ~ 45194701 (-)
G1871743 NA non-coding upstream 21126 45200842 ~ 45235792 (-)
G1871826 NA non-coding upstream 176011 45355727 ~ 45356291 (-)
G1871914 NA non-coding upstream 340633 45520349 ~ 45524124 (-)
G1868940 LOC106611807 other downstream 1663423 43486868 ~ 43501433 (-)
G1868010 NA other downstream 2186712 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 4979644 40179809 ~ 40185223 (-)
G1864033 NA other downstream 5711441 39449397 ~ 39453415 (-)
G1862272 NA other downstream 7007647 38156749 ~ 38157209 (-)
G1872165 NA other upstream 848204 46027920 ~ 46029807 (-)
G1872556 NA other upstream 1617519 46797235 ~ 46797650 (-)
G1873030 NA other upstream 1761570 46941286 ~ 46942457 (-)
G1873043 NA other upstream 1780906 46960622 ~ 46961653 (-)
LOC110502870 PHF5A other upstream 1888192 47067897 ~ 47079813 (-)

Expression


Co-expression Network