G1872524 (LOC106608977)


Basic Information

Item Value
gene id G1872524
gene name LOC106608977
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46742684 ~ 46746407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2142202
GAGTAGAGAAAAGAGGATGTAAAAGAAGACATTAATAAACATGAGCAGAGGGAGTTGGgcagagggagatgggaggagtGAAGGACATACTTTAGGGCGTGGAGTGAAGGAGAAAGAGGTCTGttcaggagagggagggatgaacaAAGTGTGCCAGTCAAAAGTCAGACACACTTCTCTCTGAAACGGTGGAAGCAGAGAACAAAGAAAGGATGAGGGAAGGGGAAAGGAAATAGGCAACAGAGAAAGAATAAAAACATGGAGACGAATGAAAAATCAAATATGAGATGACGTTGACATGCCATGAATGATCATTGCAGAATATATCTTACCttgagggaggggggatgggtgcTTTGGCTTTCAGACAAGTTGGACACCTCGCCAAAGAAAGGATGGAGATTGGGCGGGGCGGAGACAGATTGAGTGGGCTCTGGCACCCCATTGGTTATGCCATTTGTTTCCAGATGTAGACCTGCCTTCTGTTCCTTTTTGATAGACTGGTTGACAGGGCCTGGTTGTAACTGTTGTTTTGATTGGGTATCGGGGCTCAGCATCTCAGCTGGCAATTGGCTTGGGAGCTTACTTGGAGTTGACTGCAATCTCTGCAGTGTGATGCGTTGCGATCCACTGGTTTTGCCCAATGAGGTCACACCGTTTTGGCCCTCTGCACTGTTATTGGTCAGTGCTATCAGGTAGTGGTTGCCATTGCCGTCGGTGACCAGGGTGGGCGTGGTGCCCGATTTGAGGAGGTCCAATGAGAAGGCCTGGGCGGGGACCTGGGTGCCATTCTGTTGGCTGATGAAGACTGGAG

Function

NR:

description
MKL/myocardin-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2142202 True 814 lncRNA 0.50 3 46742684 46746407

Neighbor

gene id symbol gene type direction distance location
tha1 LOC106608997 coding downstream 54327 46685639 ~ 46688357 (-)
LOC110502851 eef2k coding downstream 68312 46649321 ~ 46674372 (-)
trnal-aag-68 NA coding downstream 110830 46631773 ~ 46631854 (-)
LOC110503125 polr3e coding downstream 111092 46608174 ~ 46631592 (-)
LOC110502844 LOC106609046 coding downstream 210756 46518611 ~ 46531928 (-)
LOC110502855 LOC106608961 coding upstream 129456 46875863 ~ 46882508 (-)
LOC110502858 LOC106608924 coding upstream 165103 46911510 ~ 46934903 (-)
chadlb LOC106609330 coding upstream 245967 46992374 ~ 47001698 (-)
LOC110502866 LOC106609338 coding upstream 255593 47002000 ~ 47008330 (-)
LOC110502870 PHF5A coding upstream 321490 47067897 ~ 47079813 (-)
G1872445 NA non-coding downstream 131775 46610286 ~ 46610909 (-)
G1872439 NA non-coding downstream 139696 46602483 ~ 46602988 (-)
G1872432 LOC106609027 non-coding downstream 150619 46590583 ~ 46592065 (-)
G1872390 NA non-coding downstream 238812 46503600 ~ 46503872 (-)
G1872389 NA non-coding downstream 239104 46503272 ~ 46503580 (-)
G1872550 NA non-coding upstream 42082 46788489 ~ 46788895 (-)
G1872555 NA non-coding upstream 50463 46796870 ~ 46797194 (-)
G1872558 NA non-coding upstream 55165 46801572 ~ 46801785 (-)
G1872981 NA non-coding upstream 80313 46826720 ~ 46826935 (-)
G1872989 NA non-coding upstream 96644 46843051 ~ 46843567 (-)
G1872165 NA other downstream 712877 46027920 ~ 46029807 (-)
G1868940 LOC106611807 other downstream 3241251 43486868 ~ 43501433 (-)
G1868010 NA other downstream 3764540 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 6557472 40179809 ~ 40185223 (-)
G1864033 NA other downstream 7289269 39449397 ~ 39453415 (-)
G1872556 NA other upstream 50828 46797235 ~ 46797650 (-)
G1873030 NA other upstream 194879 46941286 ~ 46942457 (-)
G1873043 NA other upstream 214215 46960622 ~ 46961653 (-)
G1873183 NA other upstream 511186 47257593 ~ 47312395 (-)

Expression


Co-expression Network