G1872984


Basic Information

Item Value
gene id G1872984
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46871279 ~ 46873895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2142738
GGGTGggtcagcttaatattgcggaaagaatgttgcttccatcaatgtgataatctgcatcatttccaatcccccatatatttttggggttaatatatatatccatacacgcatgcatacatatacacacatatacatacctatatagacatatacttttttaaagaatatacctttattattccccacaaaccctaccaccgatcccccaattggagtaaacaaataaacactttggcttttaccttcaatttatacatcttatacacattttacagacagtctattttacaatagttcgtttttttcttcctctatttctgatgtccatccagtttgatttctatttgtaactgctatttcacaaaagttctgaacctatatacattttacagacccgtGTGTTTTACATTaccttgttattagtcccacccttcagctccattcaacccctcccatcatCATTCATttcggatttctatttgccatatatttttcaactgtgctgtgatgcttggggcggcagggtagcctagtggttaaccggatggttgcaagttcaaacccccgagctgataaagtacaaatctgtcgttctgcccctgaacaggcagttaactgttcctagggcgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaagccaaaaaaaaaaaaatgcttcacaaaataatttaacctttctattctcatagcttctacagattgtaaattaataatatattttttgctaaagtaattattatattattgattgattgactatggcttttccaatcacccagtattgctatctgcagcgttagttctaggcaaatgttgcaattcttcagccattcctggacctgtgaccaaaaacgagctacgtATGGACAATTccaaaaataaatgatctaatgactctgcctcctcacagcagaatctgcagagcggagaagattgtatcccccatatatatataacattctattagttgcaggaattgtgtatagtaatttaaattgaaaaattcttagttttgaatccggcgttgttttgcttatcaattcataaaccatgtgccatggaatgggtaaaTCGataatctcttcccaactattttgcaatttatatggcacagctgtccgttttttggtcctcaaatgaaattggtatatgtttttattatcacacttttctttaaccatttgtgtTCTTTAATACAGTGCTGACATACAAGTtcatacttttttccccttctacttgcctcttccattttttgtggtaatgctgcaattaattggttgtaattttgagaagagcagacatttccatatgtctgtgttagctgcgtgtgacaactccaccagtcctatttatgatatcattcactaaaattataccttttttaaaaatttcttcgaaaaatatttttttttaatcaattcaTATATTTGAATGTAACCactttgttgtattatttgttctgtcttttcaggtggattaaactgaaattgcaaccaactttctaaggcttgtttaaaaaaataaagatattttggagattatttccttttcaaacaaccgaaagtgggctggtgtaatctgaataaaggggaaaaggcccttCTTGAACATAGATGAGACATTTGTatcaatttactagagaaccagtttggatttaagtataacttttgtatgactgatgcctttagtgagaggtctaatgctttaatatttaataatttctgccctccaaattcatattcgttatataaataggcgcttttaattttatctggcttgccgttccaaataaacttgaatattttttgtttgttcatataatttaaaaagcaggtcaacTAGGtataggcaaaaccataagcaaataggtcaactgtgatattactaaagagttaatcagggtgatttttttccacaaatagacaggtatttacctttccatggtagcaagatcttatctatttttgctaactttctataaacatgtattggagtgagatcatttcttacttttgggatttgtataccgagtatgtccacatctccgtcaggccatttaattggtaaactacatggtaatgtaaaatgtgcattttttagtgatccaatacgtaatatggtacatttatcataatttggttttaatccagagagaatagcaaaagtatctagatcctctatgaggccgtggagagactcTAGTTGTGgttttaaaataaaacattaatCATCAGCGTAAAATGACACCTTCGTTTTTAAGacacggatttctaatcccttaatattattgtttgatctaatcttAGCAGTTtacatttcgatggcaataataaatagatatgccgatagtggacaaagGCTGTCTTTGCAAGGTAAATATTTTAATGAATTCCCTAATGTCACTATGGTCATATATTGTTATAGCTATTGTATTATCAAGGCTAATGTATTCAGTAATTCACATTGGTGTTAAATCAATGTtgtgatatccccccccccaaaaaaatccatCCTTACTCTCTCCACTATTGTGATATAAATGATCCCGTTTATATTTTACGGAACTCTTGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2142738 True 2617 lncRNA 0.34 1 46871279 46873895

Neighbor

gene id symbol gene type direction distance location
tha1 LOC106608997 coding downstream 182922 46685639 ~ 46688357 (-)
LOC110502851 eef2k coding downstream 196907 46649321 ~ 46674372 (-)
trnal-aag-68 NA coding downstream 239425 46631773 ~ 46631854 (-)
LOC110503125 polr3e coding downstream 239687 46608174 ~ 46631592 (-)
LOC110502844 LOC106609046 coding downstream 339351 46518611 ~ 46531928 (-)
LOC110502855 LOC106608961 coding upstream 1968 46875863 ~ 46882508 (-)
LOC110502858 LOC106608924 coding upstream 37615 46911510 ~ 46934903 (-)
chadlb LOC106609330 coding upstream 118479 46992374 ~ 47001698 (-)
LOC110502866 LOC106609338 coding upstream 128105 47002000 ~ 47008330 (-)
LOC110502870 PHF5A coding upstream 194002 47067897 ~ 47079813 (-)
G1872997 NA non-coding downstream 2345 46868457 ~ 46868934 (-)
G1872996 NA non-coding downstream 4906 46866141 ~ 46866373 (-)
G1872990 NA non-coding downstream 19109 46844568 ~ 46852170 (-)
G1872989 NA non-coding downstream 27712 46843051 ~ 46843567 (-)
G1872981 NA non-coding downstream 44344 46826720 ~ 46826935 (-)
G1873011 NA non-coding upstream 17743 46891638 ~ 46891980 (-)
G1873028 LOC106600668 non-coding upstream 64220 46938115 ~ 46938339 (-)
G1873029 LOC106600668 non-coding upstream 64644 46938539 ~ 46938908 (-)
G1873032 NA non-coding upstream 69483 46943378 ~ 46943591 (-)
G1872556 NA other downstream 73629 46797235 ~ 46797650 (-)
G1872165 NA other downstream 841472 46027920 ~ 46029807 (-)
G1868940 LOC106611807 other downstream 3369846 43486868 ~ 43501433 (-)
G1868010 NA other downstream 3893135 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 6686067 40179809 ~ 40185223 (-)
G1873030 NA other upstream 67391 46941286 ~ 46942457 (-)
G1873043 NA other upstream 86727 46960622 ~ 46961653 (-)
G1873183 NA other upstream 383698 47257593 ~ 47312395 (-)
LOC110502901 NA other upstream 1646784 48520679 ~ 48528302 (-)

Expression


Co-expression Network